Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq201261 197 2e-44 seq204247 161 1e-33 seq292276 152 7e-31 seq358814 138 2e-26 seq245910 105 1e-16 seq289370 87.8 3e-11 >seq201261 Length=299 Score = 197 bits (218), Expect = 2e-44 Identities = 183/231 (79%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 |||||||||||||||||||||| |||||| |||| |||| ||| |||| ||| Sbjct 242 TCTACAAGGTGCTCAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 189 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| |||||||| | Sbjct 188 TGAGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGCCGAGGCCTCCC 129 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| ||| ||| | | |||||||||||||| ||||| | Sbjct 128 GCCTGGCCCACTACAACAAGCGCTCCACCATCACCTCCCGCGAGATCCAGACGGCCGTCC 69 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| || ||| || || ||||||| ||||||||||||||||||||||| Sbjct 68 GCCTCCTCCTGCCGGGAGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 18 >seq204247 Length=346 Score = 161 bits (178), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| ||| |||| ||||| Sbjct 262 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 209 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| || |||||||| |||| ||||||| ||||| ||| Sbjct 208 AGCATCATGAACTCGTTCGTGAACGACATCTTCGAGCGCATCGCGGGGGAGGCGTCCCGC 149 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| || ||| | |||| ||||||||||| ||||||||| Sbjct 148 CTGGCCCACTACAACAAGCGCTCGACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGC 89 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| || || ||||||| ||||||||| || || ||||||| Sbjct 88 CTCCTGCTGCCGGGGGAGCTGGCCAAGCACGCCGTGTCGGAAGGCACCA 40 >seq292276 Length=2347 Score = 152 bits (168), Expect = 7e-31 Identities = 123/149 (83%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 724994 CAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCG 725053 ||||||||| |||| ||||||| | |||||||| |||||||||| || ||||||||| Sbjct 187 CAACGACATCTTCGAGCGCATCGCCGCCGAGGCCTCCCGCCTGGCGCACTACAACAAGCG 128 Query 725054 CAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACT 725113 | ||| ||| | | |||||||||||||| ||||||||||| | ||| ||||| || Sbjct 127 CTCCACCATCACCTCCCGCGAGATCCAGACGGCCGTGCGCCTCCTGCTGCCGGGCGAGCT 68 Query 725114 GGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| ||||||||||||||||||||||| Sbjct 67 GGCCAAGCACGCCGTCTCCGAGGGCACCA 39 >seq358814 Length=525 Score = 138 bits (152), Expect = 2e-26 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| ||||| |||||||| || ||||||||||| || |||| ||||| | || Sbjct 196 CAAGGCCATGAGCATCATGAATTCCTTTGTCAACGATATCTTCGAGCGCATAGCTGGAGA 137 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 ||| ||| |||||| || |||||||||| ||| ||| | | |||||||||||||| Sbjct 136 GGCGTCCCGCTTGGCGCACTACAACAAGCGCTCCACTATCACCTCCCGCGAGATCCAGAC 77 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||||||||| || ||| || || ||||||| |||||||||||| || ||||||| Sbjct 76 AGCCGTGCGCCTCCTCCTGCCGGGAGAGCTGGCCAAGCACGCCGTCTCGGAAGGCACCA 18 >seq245910 Length=872 Score = 105 bits (116), Expect = 1e-16 Identities = 88/105 (84%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 262124 GAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAG 262183 ||||| || |||||||||||| ||||||||||| || ||||| || |||||||||||| Sbjct 731 GAGACGGGGACGCCCTACATGCTCTACAAGGACTCCTGCAACCGGAAGAGCAACCAGCAG 790 Query 262184 AACCTGGGCACCACGACAGAG-GCCAACCTGTGCACCGAGATCGT 262227 ||||||||||||| | || | |||||| |||||||||||||| Sbjct 791 AACCTGGGCACCATCA-AGTGCAGCAACCTCTGCACCGAGATCGT 834 >seq289370 Length=689 Score = 87.8 bits (96), Expect = 3e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 |||||||| | |||||||| ||| |||||||||||||| |||||||| ||||| Sbjct 522 TGCTTTCTCCTCTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTGAAGCAC 463 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 ||||| |||||||||||| | || || || ||||| | |||| Sbjct 462 TGCGCCCTCATCTCCAAGTCTGCGGGGGGAATCGGGGTGGCCG 420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7132152828927560