Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq387423 138 2e-27 SEQ67274 116 5e-21 seq149020 87.8 2e-12 SEQ61574 86.0 9e-12 seq206962 84.2 3e-11 >seq387423 Length=3253 Score = 138 bits (152), Expect = 2e-27 Identities = 105/124 (85%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||||||||| | || |||||||| || ||||||||||| ||||| || || | Sbjct 2661 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCT 2720 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| | |||||||| |||||||||||||| ||||| ||||| ||||||| Sbjct 2721 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 2780 Query 39759 CAAC 39762 | || Sbjct 2781 CTAC 2784 >SEQ67274 Length=15135 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| ||||| | ||| || || || || || || ||||||| || | ||| ||| Sbjct 14546 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 14487 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 |||||||||||||| ||||||| ||||| |||||||| ||||| || || ||||| ||| Sbjct 14486 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGCA 14427 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 14426 ACCACTCTTTCACC 14413 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 40115 ACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGA 40174 || ||||| ||||||| || || |||| |||| |||||||| |||||||||||| | Sbjct 10749 ACCTCTTCTACTGTCCAGAAAGAAGCCTGAGCCTGCTTGTACATTTTCCATATATCAGGG 10690 Query 40175 TATTGTATTGGAAAAATAACAAATCTATTTGGAtttttt 40213 ||||| ||||| || || ||||||| || ||||| ||| Sbjct 10689 TATTGGATTGGGAAGATGACAAATCGATGGGGATTCTTT 10651 >seq149020 Length=4682 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 40115 ACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGA 40174 || |||||||||||||| || ||||||||||| || |||||||| | ||| || ||| | Sbjct 91 ACCTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATGG 150 Query 40175 TATTGTATTGGAAAAATAACAAA 40197 ||||| || |||||||| ||||| Sbjct 151 TATTGAATAGGAAAAATGACAAA 173 >SEQ61574 Length=9803 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 39273 AAAAGTCAACATCTAAAGAAAAA---TGATTATCTTCTTGTGACATAACTCCCATTTTTT 39329 |||||||| ||||||||| ||| | ||||| | ||| ||||||||| | | | || Sbjct 9460 AAAAGTCAGCATCTAAAGTAAATACCTTATTATTTGCTTCGGACATAACTGCAAAATGTT 9519 Query 39330 GGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCA 39389 | ||||| ||| | |||| || ||||| ||||| ||||||| || || ||||||| Sbjct 9520 GATATTCTGAAACTCTCCTCTCAAAGAAATTGGTTTTTCCTTCCAGGGAAATGTTTTCCA 9579 Query 39390 TGAAATCAAACGGATT 39405 |||| ||||| || || Sbjct 9580 TGAAGTCAAAAGGGTT 9595 >seq206962 Length=5195 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 ||| |||| || ||||| || | | |||||||||||||||||| ||||| || || || Sbjct 3823 ATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 3764 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||| || || || ||||| | |||||| || | |||||| ||| Sbjct 3763 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 3718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 682844188903200