Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq387423 107 2e-18 seq149020 105 5e-18 seq226026 104 2e-17 SEQ67274 100 2e-16 >seq387423 Length=3253 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| | || || ||||| | || ||||| || |||||||| || || ||||| Sbjct 2796 GGTGAACGTGTAGTAGCATTTGCTGCAGTTGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 2737 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||||||| |||||||||||||| |||||||||| | || ||||| |||||| | Sbjct 2736 TCAATATTTTGGCTAAAGAAACGAGGTCTGATGCCTGGACTTACTTTTTCTAATGAGCTG 2677 Query 44243 ATAAGTCGTGATGA 44256 || ||| | ||||| Sbjct 2676 ATTAGTAGAGATGA 2663 Score = 105 bits (116), Expect = 5e-18 Identities = 108/141 (77%), Gaps = 9/141 (6%) Strand=Plus/Minus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 ||||| ||||| |||||||| ||||| || ||||||||||||| ||||| |||||||| Sbjct 1276 AACCCATTTGACTTTATGGAGAATATCTCTCTGGAAGGCAAAACTAACTTCTTTGAAAAG 1217 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAACAAGT------GACAATAAATTT 44608 || || ||||||||||| | ||||| | |||| ||||| || ||| ||| Sbjct 1216 CGTGTAGGAGAATATCAAAGGATGGGTG---TGATGTCAAGTCCTGCAGATAATTCATTC 1160 Query 44609 ACTACGGATGAAGATTTCTAA 44629 ||| ||||| |||||||||| Sbjct 1159 ACTTTGGATGCAGATTTCTAA 1139 >seq149020 Length=4682 Score = 105 bits (116), Expect = 5e-18 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| |||||||| |||||||| |||||||||||||| |||||| ||||| Sbjct 173 TTTGTCATTTTTCCTATTCAATACCATGACATCTGGCAAATGTACAAGAAAGCAGAGGCG 114 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 ||||| |||||||| ||||| || Sbjct 113 TCATTCTGGACAGCTGAAGAGGT 91 >seq226026 Length=7595 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 ||||| |||| || || ||| | || ||||||||| ||| || || ||||| || Sbjct 3556 ATGGCTCTGCCTCCATGCCATGCTCTCTGCCAGTTTTACATTTCAAACGGCGAACTCTCT 3615 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 ||||| | ||||| | || || ||||||||||| || || ||||| |||||||| ||| Sbjct 3616 TGTCAGCTATATCAGCGTTCTGGAGACATGGGACTGGGCGTACCGTTCAACATAGCTAGT 3675 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||| | || || || | ||||||||||| ||||| Sbjct 3676 TATTCACTTCTTACTTCAATGATTGCACATGTTAC 3710 >SEQ67274 Length=15135 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || | |||||||| || ||||| ||||| ||||| || | ||||||||| Sbjct 12524 CAAGAAGTGCAGATCCCAGAAGCTCGCTGTTTCTATGGCTTTCAGATATCAATAGAAAAT 12583 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||||| || ||||||||| | | ||||| || |||||||||||| Sbjct 12584 GTTCATTCTGAGATGTACAGTTTGTTAATAGACACCTACATCAAAGAT 12631 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||| || | || |||||||| | ||| ||||| || ||||| || || | ||||| Sbjct 14413 GGTGAAAGAGTGGTTGCGTTTGCTGCTGTCGAAGGAATCTTCTTCTCTGGTGCTTTTGCA 14472 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||||||||||| | ||||| |||| || ||||| || | || || || ||||| | Sbjct 14473 GCCATATTTTGGCTCAAGAAGAGAGGGTTAATGCCAGGCCTTACTTTCTCCAATGAACTT 14532 Query 44243 ATAAGTCGTGATGAAG 44258 || || | ||||||| Sbjct 14533 ATTAGCAGAGATGAAG 14548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395162949646900