Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq245910 102 9e-17 seq289370 87.8 2e-12 >seq245910 Length=872 Score = 102 bits (112), Expect = 9e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 79080 CTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCC 79139 ||||||| |||| || ||| | ||| || ||||| | || ||||||||||||| Sbjct 856 CTCGTCCTGGCTGGAGTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCC 797 Query 79140 GATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCC 79199 | ||||| ||||||||||||| ||| |||| |||||||||| |||||| |||||||| Sbjct 796 CAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCGTCCC 737 Query 79200 GGTCTC 79205 ||||| Sbjct 736 CGTCTC 731 >seq289370 Length=689 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 19271 ATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCC 19330 |||||||| |||||||| |||||||||||||| ||||| ||| | ||||| | ||||||| Sbjct 507 ATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTGAAGCACTGCGCCCTCATCTCC 448 Query 19331 AAGTGGTCCGGGGGTATCGGG 19351 |||| | ||||| |||||| Sbjct 447 AAGTCTGCGGGGGGAATCGGG 427 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 ||||| ||||| | ||||||||||| | ||||| | ||| ||||| |||||||||||| Sbjct 428 CCGATTCCCCCCGCAGACTTGGAGATGAGGGCGCAGTGCTTCAGCGTGTCGTAGATGCCC 487 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGA 79754 ||||| |||||||||||| || || |||||||| || Sbjct 488 TCGATGCTGTCGTCCTTCATGCAGAGGAGAAAGCAGCTGGA 528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545279041627200