Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value SEQ47241 95.1 1e-14 SEQ67274 89.7 6e-13 SEQ43673 82.4 8e-11 >SEQ47241 Length=15605 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||||||||||||||||||||| ||| | ||||| ||||| Sbjct 13527 GTGAAGATGTAACGAGGACTTGCAGCATCCTTGCCACCATGAAGCCTAGTACCAAATTGA 13468 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | | | | || || || |||||||| ||||||||||||||| Sbjct 13467 CCAATAGGCTGTAGCAAGCTGATATTATTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 13408 Query 117425 ATCGT 117429 || || Sbjct 13407 ATTGT 13403 >SEQ67274 Length=15135 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829 ||||||||||||| || | |||||| || || | |||||| ||||| | || | ||||| Sbjct 14548 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 14489 Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889 | | |||||| ||||| || | |||| ||||||||| ||||||||| ||||| | Sbjct 14488 TGAGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACG 14429 Query 74890 CGAC 74893 | || Sbjct 14428 CAAC 14425 >SEQ43673 Length=9133 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||| |||| | ||| || || || || ||||| ||||| |||||||| || Sbjct 985 GTAAAGATATATCTAGGGCTTGCAGCGTCTTTTCCACCATGCAGCCTAGTTCCAAATTGA 1044 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | || | ||| ||||||||| |||||| ||||| ||||||||||| | | Sbjct 1045 CCAATGGGTTGAAGTAAGTTCAGGTTGTTGCTGCCCACAAAATTTTGAGCCAAATTAATA 1104 Query 152149 ATCGT 152153 || || Sbjct 1105 ATAGT 1109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543977986124000