Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq252873 152 6e-32 seq256576 95.1 1e-14 SEQ47241 87.8 2e-12 seq212999 84.2 2e-11 seq173884 84.2 2e-11 >seq252873 Length=5941 Score = 152 bits (168), Expect = 6e-32 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| | ||||||||||| || || || ||||| ||| | | Sbjct 1026 AATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 1085 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| || | ||||| || || ||||||||||| || |||||||| || || Sbjct 1086 CGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCA 1145 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || || || || || |||| || || || | ||||| || Sbjct 1146 GCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCCGACTACAA 1205 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || ||||| ||| ||||||| Sbjct 1206 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCT 1244 Score = 141 bits (156), Expect = 1e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | ||||||||||| || || || ||||| ||| | | Sbjct 1255 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGC 1314 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||||||||| || |||||||| || || Sbjct 1315 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 1374 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || || || || || |||| || || || | ||||| || Sbjct 1375 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACGCTCTCCGACTACAAC 1434 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | || ||||| ||||| || || || ||| ||||||| Sbjct 1435 ATTCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGTCT 1472 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | ||||||||||| || ||||||||||| ||| | | Sbjct 1483 ATGCAGATCTTTGTAAAGACCTTGACCGGCAAGACCATAACTCTTGAGGTGGAGCCCAGC 1542 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAG 27504 || | ||||| ||| | ||||| || || ||||||||| Sbjct 1543 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAG 1581 >seq256576 Length=4007 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || |||||||| || || || |||||||| ||| || | Sbjct 1433 AATGCAGATTTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCAAG 1374 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 ||| | |||| |||| | ||||| ||||||||||||||||| || Sbjct 1373 TGACACAATTGAAAATGTCAAGGCCAAAATTCAGGACAAGGAAGG 1329 >SEQ47241 Length=15605 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || ||||||||| | |||||||||||||| || ||||| | | ||| || |||| Sbjct 13403 ACAATTGTCAACTTGGCTCAGAACTTTGTTGGAAGTAATAATATCAGCTTGCTACAGCCT 13462 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| || ||||| || |||| ||||||||||||||||| || | ||||||||| Sbjct 13463 ATTGGTCAATTTGGTACTAGGCTTCATGGTGGCAAGGATGCTGCAAGTCCTCGTTACATC 13522 Query 32245 TTCACC 32250 |||||| Sbjct 13523 TTCACC 13528 >seq212999 Length=2373 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/200 (71%), Gaps = 8/200 (4%) Strand=Plus/Minus Query 80590 GTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC---GACTCCATAAGGGCCGCGTGA 80646 |||| ||| || |||| | | |||||||||| || | ||||| | ||| || Sbjct 1823 GTCTGGTAGGGCCCCTGCTCCCTGGCCAGCTCGCAGCTGGCCTCCA---GCGCCCAGTAG 1767 Query 80647 TAAATGCACTCAAAGACGCCCTTGTTCACACCGC-GCGCCTGTGGGTCGTCGAACGACAA 80705 |||||| ||| |||| || ||| | |||| | ||||| ||| ||||| | || Sbjct 1766 TAAATGGTCTCGAAGATCTGCTGGTTGAG-CCGCTGGGCCTGGGGGCTCTCGAAGGGGAA 1708 Query 80706 GCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCG 80765 || ||| | ||||| |||| ||||||||||| || |||||| |||| ||||| ||||| Sbjct 1707 GCGCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACCCCGATGCCGATGGGGCGATGGCG 1648 Query 80766 CTTGTTCGATCGCTCGGCCT 80785 | ||| || |||||||| Sbjct 1647 CCGGTTGGAGGTCTCGGCCT 1628 >seq173884 Length=11539 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||| ||||| |||||| ||||||||||||| || ||| | ||||||| ||| Sbjct 7021 GGGATTCCTCCTGACCAACAGCGTTTAATTTTTGCTGGCAAACAATTGGAGGATGGACGT 7080 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAAT 27598 || || | || ||||| ||||||||| || Sbjct 7081 ACTCTGTCTGATTATAACATCCAAAAGGTAT 7111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566935730785600