Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value SEQ43688 136 5e-27 >SEQ43688 Length=11187 Score = 136 bits (150), Expect = 5e-27 Identities = 132/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 32661 ATAGCCAGAGCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATT 32720 ||||| |||| || |||| |||| || || ||||| || || ||||| || || || Sbjct 3877 ATAGCAGGAGCTTTATGGTGGTATTACATATCCAAAGGGATTGAGTATCTGGACACAATA 3818 Query 32721 TTCTTCATAATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTT 32780 |||||||| | |||||||||||||| ||| | |||||| | || || || |||||||| Sbjct 3817 TTCTTCATCCTAAGAAAGAAATTTAATCAAATCAGCTTTCTTCATGTCTATCACCATTTC 3758 Query 32781 ACCATGTTTACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 || ||||||||||| | ||||| || || || ||| ||||||||||||| Sbjct 3757 ACTATGTTTACTTTGTGGTGGATTGGCATAAAGTGGGTTGCAGGAGGACA 3708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 599611628411200