Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq252873 100 2e-16 seq291000 86.0 4e-12 >seq252873 Length=5941 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||| | || || || || ||||| || || || || || Sbjct 1024 AAAATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 1083 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||| | | || || || ||||| ||||| | || || ||| Sbjct 1084 AGCGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGAT 1143 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || |||||||||||||| |||||||| | |||||| | ||| ||| Sbjct 1144 CAGCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCCGACTAC 1203 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 1204 AACATCCAGAAGGAGTCCAC 1223 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || || || ||||| || || || || ||| Sbjct 1255 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGC 1314 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| ||||| | || || ||||| Sbjct 1315 GACACCATTGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCTCCTGATCA 1373 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || |||||||||||||| |||||||| | ||||| | ||| ||||| Sbjct 1374 ACAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACGCTCTCCGACTACAA 1433 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 1434 CATTCAGAAGGAGTCCAC 1451 >seq291000 Length=249 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || || || ||||| || || || || ||| Sbjct 1 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 60 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || || || ||||| | || || ||||| Sbjct 61 GACACCATTGAGAACGTCAAGGCGAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 120 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||||||||| |||||||| | ||||| | ||| |||||| Sbjct 121 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 180 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 181 ATCCAGAAGGAGTCCAC 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336059514877040