Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq252873 138 3e-27 >seq252873 Length=5941 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||| ||||| || || |||| ||||| |||| | ||| | ||||| Sbjct 1239 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATC 1180 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| || || || ||||| || | || || ||||| ||||| ||||||||||| Sbjct 1179 TTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 1120 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || || |||||||| || ||||| || | ||||| || Sbjct 1119 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 1060 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| ||||| || || | || | |||||||| Sbjct 1059 CTTGCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 1024 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| |||||||| ||||| || || || | ||||| |||| | || | ||||| Sbjct 1467 CAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGGCCATC 1408 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| || || || ||||| || | ||||| || || ||||| ||||||||||| Sbjct 1407 TTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGAATGCCTTCCTTGTC 1348 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || |||||||| || ||||| |||| ||||| || Sbjct 1347 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGT 1288 Query 225681 CTTGCCCGTCAAAGTTTT 225698 |||||| ||||| || || Sbjct 1287 CTTGCCGGTCAAGGTCTT 1270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185298282125720