Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq387423 113 4e-20 SEQ67274 111 1e-19 >seq387423 Length=3253 Score = 113 bits (124), Expect = 4e-20 Identities = 108/137 (79%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 |||| || |||| | ||||| |||||||| || |||||||| || | ||| ||||| | Sbjct 2651 ACAAATCATACCT-CATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAG 2709 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 ||||| || || ||||||||||| | ||||| || ||||||||||| || ||||| || Sbjct 2710 ACCTCGTTTCTTTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAAC 2769 Query 4679 GGCGGCAAACGCTACTA 4695 || ||||| ||||||| Sbjct 2770 TGCAGCAAATGCTACTA 2786 >SEQ67274 Length=15135 Score = 111 bits (122), Expect = 1e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| ||||||||||| ||||| || || || || | || |||||||| |||||||| | Sbjct 14548 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 14489 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | ||||||||||| || ||||| | ||||| ||||| || ||||| || || ||||||| Sbjct 14488 TGAGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACG 14429 Query 4690 CTAC 4693 | || Sbjct 14428 CAAC 14425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424585814735540