Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq387423 116 5e-21 SEQ67274 93.3 6e-14 >seq387423 Length=3253 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||||||||| | || |||||||| || || || ||||| || || ||||| || Sbjct 2663 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCTTT 2722 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||||| || ||||| ||||||||||| || ||||| || || |||||||| Sbjct 2723 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGC 2781 Score = 100 bits (110), Expect = 4e-16 Identities = 106/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 47794 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 47850 |||| || || |||| |||| || ||||||| | || ||||| || ||||| Sbjct 1138 TTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGCAGGACTTGACATCACACCCATCC 1197 Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910 |||||||||| || ||||| || || || || |||||||||||||||| || ||||| | Sbjct 1198 TTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATATTCT 1257 Query 47911 CCATAAAATCAAATGGATT 47929 ||||||| |||||||| || Sbjct 1258 CCATAAAGTCAAATGGGTT 1276 >SEQ67274 Length=15135 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||||||||| ||||| | ||| || || || || || || ||||||| || | || | Sbjct 14548 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 14489 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 ||||||||||||| || || |||| ||||| ||||| || ||||| || || ||||| | Sbjct 14488 TGAGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACG 14429 Query 48283 C 48283 | Sbjct 14428 C 14428 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTG 48698 || ||||| ||||||| || || |||| || | || ||||| |||||||||||| | Sbjct 10749 ACCTCTTCTACTGTCCAGAAAGAAGCCTGAGCCTGCTTGTACATTTTCCATATATCAGGG 10690 Query 48699 TATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAAGGATAGGTTC 48751 |||||||||||||| || ||||||| || ||||| ||| | || |||||| Sbjct 10689 TATTGGATTGGGAAGATGACAAATCGATGGGGATTCTTTCTTAAGAGAGGTTC 10637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690558271043200