Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq252873 107 2e-18 >seq252873 Length=5941 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 |||||||| || ||||| || || ||||||||||| ||||| ||| |||| ||| ||| Sbjct 1024 AAAATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 1083 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 ||||| | ||| | || || || || ||||| |||||| |||| |||| Sbjct 1084 AGCGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGAT 1143 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 || || ||||| || | ||| |||||||| |||||||| ||| | |||| || Sbjct 1144 CAGCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCCGACTAC 1203 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || || || || || || || ||| | || |||||||| | || |||| Sbjct 1204 AACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGCGGCA 1255 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || || ||||||||||| ||||| ||| | || ||| |||||| Sbjct 1255 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGC 1314 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || || || ||||| |||||| |||| |||||| Sbjct 1315 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 1374 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| |||||||| |||||||| || | |||| || || Sbjct 1375 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACGCTCTCCGACTACAAC 1434 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || || || || || || || | || |||||||| | || |||| Sbjct 1435 ATTCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGTCTGAGAGGCGGCA 1483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419377636734880