Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq238723 143 4e-29 seq127711 131 2e-25 seq150737 89.7 7e-13 >seq238723 Length=2656 Score = 143 bits (158), Expect = 4e-29 Identities = 166/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 |||| | || ||||| | ||| || || | ||||| || ||||||||||||||||| Sbjct 699 TTGCTGTGTTCACGATTCGGAAGCCGGCGGCACCGCCAAAAGTGCTGGGCTTCCAGTATT 640 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | |||||||||||| |||| ||| ||| || || | |||||| |||||||||| ||| | Sbjct 639 CGGGGGAGCAGATGGGGTTCCCCAGGAGCCCCTTCAAGGAGAAGGGAGCCCCCATCTCTA 580 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||||||| || |||||| |||||| || ||| |||||||| | |||| | | | Sbjct 579 TCATGCTCTGTCCAAAGATGCCGTTGGAGTAGGTCTTCTCCACCAACAGGCCGGGGAAGA 520 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCA 8566 ||||| ||| || | |||||| || || || |||| |||| Sbjct 519 ACTCCAGAGCATCAATGTCTCCATACAGCGCTTCCAGTTTGGCA 476 >seq127711 Length=14987 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 ||||| || ||| | || ||| ||||||||| |||||| || || || || || ||| Sbjct 11547 GTCTGAAATAGTCGTTCATCATCCCATTCTGGGTGTTCTCCCTTAAGGACGTCACAGACC 11488 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 | || ||||||| |||||| | ||||| |||||||| ||||| || |||| |||||| Sbjct 11487 CGATTATGTTCCCGGAGCCACAACGTGGCATACATCATCAGCCCTGGAACCAAGCCAAAG 11428 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || |||| | || || || || | | ||| ||||||||||| | Sbjct 11427 ACCTCCTGTCCTACAGAAAATTTCAGGTGGTCAGGGATGTGGGGTGGATAGATCATTTCT 11368 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTG 9485 |||| ||||| || | || ||||||||||| || ||||||||||| Sbjct 11367 GCCTGAGTTTCTTTCACAGTAGGCGGATACATTTCTCCATCAATCATCTG 11318 Score = 118 bits (130), Expect = 2e-21 Identities = 172/238 (72%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCT-CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGA 8409 || ||||| | || ||||| ||| || || || || || ||||||||||| | || || Sbjct 14495 TTCACGATGTCAAAGCCCAC-TCTACCCCCAAAAGTACTTGGCTTCCAGTATTCAGGTGA 14437 Query 8410 GCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCT 8469 ||||||||| || |||| || ||||| | |||||| |||||||| | || | ||| | Sbjct 14436 GCAGATGACATTTCCCATAAGACCTTTCAAGGAGAAGGGAGCCCCAAGTTCAATCATGGT 14377 Query 8470 CTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCCA 8528 |||||| |||||||| || || ||||||| || |||||| | | ||| | |||| Sbjct 14376 CTCACCAAAGATGGCTCCAGGGCGTGGCTTTT-CAACAAGAAGAGCAGGGTATAATTCCA 14318 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 ||| || | ||||| || || | ||||| ||||| || || ||||| ||||| Sbjct 14317 TAGCTTCAATATCTCCATAGAGCTCTTCAAGTTCTGCAGCCATTTCTTTTTCACCTGT 14260 Score = 93.3 bits (102), Expect = 6e-14 Identities = 112/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 ||||||||||| || || ||||| |||||| | || ||| | | ||| ||| | || Sbjct 10191 CTTACCCCATGCCCAAGACCTTTTGTGAAGCCTGGTCCTTTCTGAATATCTGTCTTGAAG 10132 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 ||||||| |||||||| ||| |||| |||| ||||| | || ||||| || ||||| Sbjct 10131 TACTGGTGAGTGAAATGCTGGGCAAAGAAGGTGAACATGACATTTGTGCCTTGAGGATCA 10072 Query 9770 GGAGTGAAGGTCCTCCGAAG-AAGAGTTTTT 9799 ||| |||| | |||| || |||| ||||| Sbjct 10071 GGAATGAATTTTCTCCTTAGCAAGAATTTTT 10041 >seq150737 Length=878 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9085 TGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTGGTACTGGAACGAAGTA 9144 |||||||| |||| | ||| ||||| | || || || |||||||||||| | Sbjct 250 TGCCAGTGGTACAGCTGGTTGAACTCCAGAGCGATGCGGTTCTGGTACTGGAACTGGGCC 191 Query 9145 CCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGGTAGCCGCTGAGCTGCTGAACG 9204 ||||| || || |||||| |||| ||||| ||| |||||||||||||| ||||| ||| Sbjct 190 CCAAACAGAAGCTCGGGCGCAAACGTCAGCTTAAAGTGGTAGCCGCTGAGATGCTGGACG 131 Query 9205 TATTGCGTCACGATAATGTTGATGGTTTCCCC 9236 || | | | || ||| ||||| || || || Sbjct 130 TAATCCTCAATGACAATTTTGATCGTCTCACC 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712634860755200