Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq252873 150 4e-31 seq291000 140 8e-28 >seq252873 Length=5941 Score = 150 bits (166), Expect = 4e-31 Identities = 165/217 (76%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||| || | || || || || |||||||| |||||||| Sbjct 1024 AAAATGC---AGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGA- 1079 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||| ||||||||||| ||||| |||||||| ||||| || |||| Sbjct 1080 -GCCCAGCGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTC 1138 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | || ||||| | || ||||| ||||| |||||||| |||||||| | ||||| ||| Sbjct 1139 CCGATCAGCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCCG 1198 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||| |||| || || || || || |||||||| Sbjct 1199 ACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGT 1235 >seq291000 Length=249 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || |||||||| |||||||| || ||| Sbjct 4 CAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 61 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| ||||| || ||||| || ||||| || |||| Sbjct 62 ACACCATTGAGAACGTCAAGGCGAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAGC 121 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || |||| || ||| Sbjct 122 AGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 181 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || |||||||| Sbjct 182 TCCAGAAGGAGTCCACCCTCCATCTTGT 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1196430352095720