Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq252873 138 1e-27 seq291000 123 2e-23 >seq252873 Length=5941 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| | ||||| | ||||| || || ||| ||||||||||||||| |||||||| Sbjct 1482 GCCGCCTCTCAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 1423 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || ||||| |||||||| || ||||| | |||||| || | || Sbjct 1422 GAGCGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGG 1363 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || ||||||||| ||| || ||| | | | |||||||| | |||||| Sbjct 1362 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCAC 1303 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || || |||| ||||| || || ||||||||| Sbjct 1302 CTCTAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCATG 1254 Score = 134 bits (148), Expect = 1e-26 Identities = 174/238 (73%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| | ||||| | || ||||| || ||| ||||||||| ||||| |||||||| Sbjct 1254 GCCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1195 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || ||||| |||||||| || ||||| | ||| || || | || Sbjct 1194 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGAGG 1135 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACT 41810 || || ||||||||| ||| || ||| |||| | || |||||||| | || Sbjct 1134 AATGCCTTCCTTGTCCTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCGCTGGGCT 1079 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 ||||||||| || || || || || |||| ||||| || || |||||||| || || Sbjct 1078 CCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCATTTTCTC 1021 >seq291000 Length=249 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| ||||||||| ||||| ||||||||||||||||| Sbjct 218 AGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 159 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| |||||||| || ||||| | ||| || || | |||| || ||| Sbjct 158 CCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCC 99 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 || ||| ||| || ||| |||| | || ||||| || | ||||||||||| Sbjct 98 TTATCCTGGATCTTCGCCTT----GACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAG 43 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || |||| ||||| || || |||||||| Sbjct 42 GGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 459568431656000