Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq38 109 4e-19 seq70 107 1e-18 >seq38 Length=209695328 Score = 109 bits (120), Expect = 4e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||||||||||||||| ||||| |||||||| || ||||| |||||||| | ||| |||| Sbjct 98356069 CTTTATATTCTGCTCCAAAATGTCTCCACTGGAAACCATAAACAGGTCCTAAATCACCTT 98356128 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| ||||| ||||||| || || | |||||||| |||||||||| Sbjct 98356129 CCACTCTGTGGGTGAAACCTTGTTTATCCAAGAACTCACGTGATCCATTGGCATCCCAAA 98356188 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTT 102180 | | || || ||| || |||||||| Sbjct 98356189 TCTTGACTCCCTTTGCAGAGAGCTCTTT 98356216 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 || ||||||||||||||| | || | || ||||| || ||||| || || ||||||||| Sbjct 98350431 GTCACATGAGCAATCATGTACGTGAGCAGTGAATAACTGGCAATATTGAAAGGCACTCCT 98350490 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCA-TCACAGACATA 101871 | |||||||| | ||||| |||||||| || || ||||||| ||| | ||| ||||| Sbjct 98350491 AGTCCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCGCCATTTACA-ACATA 98350549 Query 101872 AAATTGACTTAATACATGACAAGGCGGCAACACCAT 101907 ||||| | | |||| ||||| || || |||| Sbjct 98350550 GAATTGGCAGAGAGCATGGCAAGGGGGTAAAGCCAT 98350585 >seq70 Length=183555969 Score = 107 bits (118), Expect = 1e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 4294 AGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATT 4353 ||||| ||||||| || | |||||||| |||||||||| || |||||||||||||| Sbjct 22963147 AGTTCTCTGCTGAGCACTATGTTAATTCTATCTTTTAAAGGACGATTCTTCTCAGGAATA 22963088 Query 4354 GAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTGG 4400 |||||||| ||||| |||||||| |||| | ||| |||||| |||| Sbjct 22963087 GAGAACCAGGTCTTCTTACCCATTATCAACACATTTTGTTTACCTGG 22963041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361250843377331