Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13]
81 sequences; 2,640,792,433 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq38 109 4e-19
seq70 107 1e-18
>seq38
Length=209695328
Score = 109 bits (120), Expect = 4e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092
|||||||||||||||| ||||| |||||||| || ||||| |||||||| | ||| ||||
Sbjct 98356069 CTTTATATTCTGCTCCAAAATGTCTCCACTGGAAACCATAAACAGGTCCTAAATCACCTT 98356128
Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152
| |||||| ||||| ||||||| || || | |||||||| ||||||||||
Sbjct 98356129 CCACTCTGTGGGTGAAACCTTGTTTATCCAAGAACTCACGTGATCCATTGGCATCCCAAA 98356188
Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTT 102180
| | || || ||| || ||||||||
Sbjct 98356189 TCTTGACTCCCTTTGCAGAGAGCTCTTT 98356216
Score = 104 bits (114), Expect = 2e-17
Identities = 118/156 (76%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812
|| ||||||||||||||| | || | || ||||| || ||||| || || |||||||||
Sbjct 98350431 GTCACATGAGCAATCATGTACGTGAGCAGTGAATAACTGGCAATATTGAAAGGCACTCCT 98350490
Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCA-TCACAGACATA 101871
| |||||||| | ||||| |||||||| || || ||||||| ||| | ||| |||||
Sbjct 98350491 AGTCCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCGCCATTTACA-ACATA 98350549
Query 101872 AAATTGACTTAATACATGACAAGGCGGCAACACCAT 101907
||||| | | |||| ||||| || || ||||
Sbjct 98350550 GAATTGGCAGAGAGCATGGCAAGGGGGTAAAGCCAT 98350585
>seq70
Length=183555969
Score = 107 bits (118), Expect = 1e-18
Identities = 88/107 (82%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 4294 AGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATT 4353
||||| ||||||| || | |||||||| |||||||||| || ||||||||||||||
Sbjct 22963147 AGTTCTCTGCTGAGCACTATGTTAATTCTATCTTTTAAAGGACGATTCTTCTCAGGAATA 22963088
Query 4354 GAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTGG 4400
|||||||| ||||| |||||||| |||| | ||| |||||| ||||
Sbjct 22963087 GAGAACCAGGTCTTCTTACCCATTATCAACACATTTTGTTTACCTGG 22963041
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361250843377331
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |