Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq38 96.9 2e-15 >seq38 Length=209695328 Score = 96.9 bits (106), Expect = 2e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 97397 CTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTT 97456 ||| |||||||||||||||||| ||||| ||||| |||||||||||||| | || |||| Sbjct 98356069 CTTTATATTCTGCTCCAAAATGTCTCCACTGGAAACCATAAACAGGTCCTAAATCACCTT 98356128 Query 97457 CTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAA 97516 | |||| | |||||| | ||||| || | | |||||||| |||||||||| Sbjct 98356129 CCACTCTGTGGGTGAAACCTTGTTTATCCAAGAACTCACGTGATCCATTGGCATCCCAAA 98356188 Query 97517 TGTGCACACCAGATGCTGCAAGCTCTTT 97544 | | || || ||| | |||||||| Sbjct 98356189 TCTTGACTCCCTTTGCAGAGAGCTCTTT 98356216 Score = 95.1 bits (104), Expect = 8e-15 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 || ||||| || ||||| | || | || ||||| || ||||| || |||||||| ||| Sbjct 98350431 GTCACATGAGCAATCATGTACGTGAGCAGTGAATAACTGGCAATATTGAAAGGCACTCCT 98350490 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCA-TCACACACATA 97235 ||||||||||| | ||||| ||||| | ||| || ||||||| ||| | ||| ||||| Sbjct 98350491 AGTCCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCGCCATTTACA-ACATA 98350549 Query 97236 AAACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 || || | | |||| || ||||| || ||||| Sbjct 98350550 GAATTGGCAGAGAGCATGGCAAGGGGGTAAAGCCAT 98350585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346783657659170