Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq73 129 1e-24 >seq73 Length=52630461 Score = 129 bits (142), Expect = 1e-24 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 51895 GCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATA 51954 || ||||||| ||||||| | |||||||| || ||||||||||| || ||||||||||| Sbjct 10810013 GCTTTATGGTGGTACTATGTCTCCAAAGGAATTGAATACTTGGACACAGTATTTTTCATC 10810072 Query 51955 CTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTT 52014 || |||| |||||||| || | ||||| || || || |||||||||| || ||||| Sbjct 10810073 CTGCGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTTTATCATCATTACACCATGTTC 10810132 Query 52015 ACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 || | | ||||| || || || ||| |||| ||||| || Sbjct 10810133 ACCTTGTGGTGGATTGGAATCAAGTGGGTTGCAGGAGGACA 10810173 Score = 102 bits (112), Expect = 2e-16 Identities = 104/133 (78%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || |||||||||||||| ||||| | ||||| |||||| ||||||||| || ||||| Sbjct 10812662 GCTTTTTTTGGAGCTCATATAAATGCATTTATTCATGTTGTTATGTACATGTACTATGGA 10812721 Query 52117 ATGGCCGCTTGTGGTCCT-ATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| ||| | |||||| ||||| || ||||||||||| || | || || Sbjct 10812722 TTAGCTGCCTGTGGCCCTAAAGTTCAG-AAGTACCTCTGGTGGAAACGATACTTGACCAT 10812780 Query 52176 AATGCAGTTGGTA 52188 | | || |||||| Sbjct 10812781 ACTACAATTGGTA 10812793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923195865263240