Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq38 100 3e-16 seq74 95.1 1e-14 >seq38 Length=209695328 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 ||||||||| ||| | || |||||||| ||| || | | || ||| || | | Sbjct 163281468 TTAAAAATCTGCATCCAAAGTGAACACATTGTCTGTTGTCTCTGCCATTACAGCGAAGCG 163281527 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||||| || ||||| ||| |||||||| || || |||||||||| |||||||||||| Sbjct 163281528 CTGATACTCTGAAACTCGCTTCTCAAAGAAGTTGGTCTTTCCTTCTAGTGAAATATTTTC 163281587 Query 16006 CATAAAATCAAAAGGATTTTTTG 16028 ||| ||||||||||| |||| || Sbjct 163281588 CATGAAATCAAAAGGGTTTTCTG 163281610 >seq74 Length=41239083 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | ||| || ||||| || || || ||||||| ||||| ||| || Sbjct 8041923 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 8041864 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||| || | ||||| || ||||||||||| || ||||| ||||| ||||| || Sbjct 8041863 AACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAGCT 8041804 Query 16379 AC 16380 || Sbjct 8041803 AC 8041802 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || ||||| ||||| || | ||| ||||||||||||||||| || ||||| || ||||| Sbjct 8038866 ATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGCAATCTGG 8038807 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || |||||||| || | |||||| | || || ||||| Sbjct 8038806 AAGCCATAAAAACAGCGAGCTTCTGTAATCTGCACTTC 8038769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511531706600