Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq42 286 2e-72 seq78 127 1e-24 >seq42 Length=54617404 Score = 286 bits (316), Expect = 2e-72 Identities = 682/1030 (66%), Gaps = 11/1030 (1%) Strand=Plus/Plus Query 107603 GCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAA 107662 |||| ||| ||||| | || | ||||| ||| | || ||||| | ||||| | Sbjct 40096009 GCGGGTGCCGCTCACACCCGCCGACTACCTGAACCTGACGGCGGACTGCGCGCGCTACCG 40096068 Query 107663 GGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGC 107722 |||| || ||| | ||| | | ||||| | || ||| | |||||| | || Sbjct 40096069 CGCCCGGCGGCGCTTCCTGCAGGTGGCGCTGAGCGAGGAGGAGGCGGCCTTCCCGCTCGC 40096128 Query 107723 CTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTA 107782 || ||| ||||| |||| || || | || || || || || ||||| ||| |||| Sbjct 40096129 CTTCTCCATGGTCATCCACGACCAGCTGGAGCTGTTCGAGCGCCTCCTGCGCGCCCTGTA 40096188 Query 107783 TGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGA 107842 || || |||||| | |||||||| |||||||| | ||| | || | ||| | Sbjct 40096189 CGCGCCGCAGAACGTGTACTGTGTGCACGTGGACGCCAAGGCGCCCGCCGAGTTCCTGCA 40096248 Query 107843 GGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCC 107902 ||| || |||| | ||||||||||||| |||||| ||||||| | ||| | Sbjct 40096249 GGCCGTGCGGGCCCTGGCCGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGGCTGGAGCA 40096308 Query 107903 GGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCT 107962 || || || || |||||||| | |||| || ||||| ||||| ||||| ||| |||| Sbjct 40096309 CGTCGTCTACGCGTCCTGGTCGCGCCTGCAGGCCGACCTCAACTGCATGGAGGACCTGCT 40096368 Query 107963 CCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAA 108022 | | | | ||| ||| ||| | || || || ||||| || ||||||||| | || Sbjct 40096369 GCGCCGGCCCGAGCCCTGGCGCTACCTGCTCAACACCTGCGGCACCGACTTCCCCCTCAA 40096428 Query 108023 GACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTC 108082 |||||| |||||||| || | |||||| || || | || ||||| |||||||| Sbjct 40096429 GACCAACGCCGAGATCGTGCGGGCCCTGCAGCTGCTCCGTGGCCGCAACAGCATGGAGTC 40096488 Query 108083 TGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACA- 108141 ||| || |||| ||| | |||||| | |||| || | ||| | | | Sbjct 40096489 GGAGCAGCCCTCTGCCATCAAGCGCCAGCGCTGGCACTACCAGTACCAAGTGTCTGGGAG 40096548 Query 108142 -----CACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCC----A 108192 | ||| || |||||| || ||| ||| || || | | | | | | Sbjct 40096549 TGGTGCCCTGGTGCCCACCAGCGTGACCAAGAGCCCCCCGCC-GCTGGGTAGCGCCAAAA 40096607 Query 108193 TGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACA 108252 ||||||| || |||||||| | |||| | |||| ||| || | || || | || | Sbjct 40096608 TGTTCACGGGCAATGCCTACATAGTGGTGACGCGAGACTTCGTGCGCCACATCCTGGAGA 40096667 Query 108253 ACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACC 108312 ||| | || | ||| | | |||| | | ||||| || ||||| || || ||| Sbjct 40096668 GCCCCGAGGTGCAGCGCCTGCTGGCCTGGGCCCAGGACACGTACAGCCCAGATGAGCACG 40096727 Query 108313 TCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGT 108372 | |||||||| || ||||| ||| | |||| ||||| | || | || ||||| Sbjct 40096728 TGTGGGCCACGCTACAGCGCCTGCCGGGCGTGCCGGGCTCCTTGCCGCCCAACGACAAGT 40096787 Query 108373 ATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAG 108432 | || | || ||||||| |||| | || | | |||||||||||||||| ||||| | Sbjct 40096788 ACCATCTGTCTGACATGAATGCCCTGGCACGCTTTGTCAAGTGGCAGTACCTGGAGGGCG 40096847 Query 108433 ATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCA 108492 | | | |||||| || || |||| ||| | || | || ||| |||||||||| Sbjct 40096848 ACATAGGGCGGGGGGCACCCTACCCACCGTGCACCGGCACGCACCGGCACGCCATCTGCA 40096907 Query 108493 TTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGT 108552 | ||||| || |||||| |||||| |||||| | || ||||| |||| ||||||| Sbjct 40096908 TCTACGGCCTGGGAGACCTGCCCTGGATGCTCCAGCAGCAACACCTGCTGGCCAACAAGT 40096967 Query 108553 TTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGG 108612 |||||| ||| ||||| || | | |||||||| | || ||| |||| || || ||| Sbjct 40096968 TTGACCTGAGTGTGGACGAGCAGGCGGTGCAGTGCCTGGAGGAGCACCTGCGCCACCAGG 40097027 Query 108613 CCATCTATGG 108622 | ||| ||| Sbjct 40097028 CGCTCTTTGG 40097037 >seq78 Length=264820526 Score = 127 bits (140), Expect = 1e-24 Identities = 262/382 (69%), Gaps = 11/382 (3%) Strand=Plus/Plus Query 107764 GGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAG- 107822 ||||| ||| ||| ||||| || |||||| | | |||| |||| | |||| ||| Sbjct 252638628 GGCTGTTGCCTGCCCTGTATATCCTGCAGAACCTCTGCTGTATCCATATAGATGCCAAGC 252638687 Query 107823 TCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTC 107882 ||| ||| |||| || | |||| || | || | ||||||||||||||||| Sbjct 252638688 TCCTAAGA-ACTTCCAGA-AGGCAGTACCTGGGATCGCATTGTGCTTCCCCAATGTCTTT 252638745 Query 107883 ATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTG 107942 ||||||| ||| || ||| || |||| |||||||| | | || || || | Sbjct 252638746 TTGGCCAGCAAGCTGAAGTGGGTAGTCCATGCATCCTGGTCAATGCTTCAGGCCAACATC 252638805 Query 107943 AACTGTATGGAAGACTTGCTCCAG-AGCTCAGTGCCATGGAAGTACTTACTGAATACATG 108001 ||||| |||||||||||||||||| | || ||| || ||| | | | | ||||||| ||| Sbjct 252638806 AACTGCATGGAAGACTTGCTCCAGCATCT-AGTTCCCTGGCAATTCCTCCTGAATATATG 252638864 Query 108002 CGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAA 108061 || | ||||| |||| |||| |||| || ||| ||| ||||| ||| | |||| Sbjct 252638865 TGGCTCTGACTTTGCCATCAAGATCAATTCCAAGA---TCCAAGCCCTGAAGCTTCTGAA 252638921 Query 108062 GGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaa---aaaTCGCTGGAA 108118 | | ||||| ||||| | || || || ||| |||| || |||||||||| Sbjct 252638922 AGTGGAAAACAGCCTGGAGCCAGAAAAGCCCTCAGAGGCCAAGAAGTTCCATCGCTGGAA 252638981 Query 108119 ATACCGCTATGAGGTGACAGAC 108140 | || ||||| ||| |||| Sbjct 252638982 GTTCCCTTATGAAGTGGGAGAC 252639003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348268456193394