Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq74 86.0 1e-11 seq38 84.2 4e-11 >seq74 Length=41239083 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || || ||||| ||||| ||||||||||||||| ||| | || ||||||||||| ||| Sbjct 8041802 GTAGCTTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCCATTTTTTGG 8041861 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027 | ||||| || || | ||||||| ||||| | || |||||| |||| Sbjct 8041862 TTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAGCTCAT 8041911 >seq38 Length=209695328 Score = 84.2 bits (92), Expect = 4e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||||||||| |||||||||||||| || | || || |||| || ||| Sbjct 163297421 GTTGCCTTTGCTGCAGTGGAAGGAATCTTCTTCTCAGGATCTTTTGCTGCCATATTTTGG 163297362 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATT 102028 | ||||| || || | ||||||| || || | |||||||||| ||||| Sbjct 163297361 CTGAAGAAGAGAGGCCTGATGCCTGGACTGACTTTCTCCAATGAGCTCATT 163297311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989582972997355