Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq38 129 7e-25 seq74 111 2e-19 seq78 93.3 5e-14 seq68 87.8 2e-12 >seq38 Length=209695328 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | || || || || || ||||| ||||| ||||| | ||| | Sbjct 163297298 CCTCATCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 163297357 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||||| ||| || ||||| || |||||||||||||| ||||||||||||| Sbjct 163297358 TCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 163297417 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 163297418 CAACCACTCTCTCCCC 163297433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 33969 TTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 34028 |||||||| || |||||||| |||||||||||||| |||| |||||| |||||||||| Sbjct 163307566 TTTTCATTTACAATTCCATCGCTGGCTGCAAAAAATGCCAGGACATGTGATATAAAATAT 163307625 Query 34029 TTTTCGTCTGGTGTTAGTTTATTCCA 34054 ||||| |||| | | | || ||||| Sbjct 163307626 TTTTCTTCTGATTTCAACTTGTTCCA 163307651 >seq74 Length=41239083 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||||| || | || |||||||| |||||||| ||||||| || | || | Sbjct 8041925 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 8041866 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | |||||| ||||| || || || || ||||||||||||||||||||||| ||||| | Sbjct 8041865 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAG 8041806 Query 33724 C 33724 | Sbjct 8041805 C 8041805 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||| | ||||| || || | ||||| |||||||| |||||||||||||| ||||| Sbjct 8038873 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 8038814 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 ||||| || || || ||||| | ||| || ||||||||||||||| Sbjct 8038813 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTAATCTGCACTTCT 8038768 >seq78 Length=264820526 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 || |||||||| ||||||||||||||||| || || | || || || || | || || Sbjct 1192773 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGC 1192714 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 ||||| || || || ||||| || | |||||| ||| | | ||||| | |||||||| Sbjct 1192713 TCCTCCTTCCCCGTGTTCTTCTTCAAATCGAGAAACTCAAAGATATCCAAGTGCCACGGC 1192654 Query 63387 TCCAAGTATATGGC 63400 |||| ||| ||||| Sbjct 1192653 TCCAGGTAAATGGC 1192640 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || ||||| || ||||| || ||||| ||||| |||||||| |||||||| | |||||| Sbjct 1190053 GTGCCCGCGTTGAATAAAGTGGGAGAGGCGTGGGTAAACCACTTTTCAGACAAGAGATTG 1189994 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 ||||| ||||| | | || || || || || || || || | ||| | ||| | | Sbjct 1189993 TACGTTTCAATTGAGGCATCAATGTCGTCTTTGTGGATGCCCACAGAGACCCTCATCAGC 1189934 Query 63783 ATGTGCTGAGG 63793 |||||||| || Sbjct 1189933 ATGTGCTGGGG 1189923 >seq68 Length=189227759 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188494 TTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTTCTTGC 188553 ||||||||||| || || |||||||||| || | |||||||| |||||||||| Sbjct 23868914 TTTCTATGATGTATCCATTGTCCTACAAGCTTTTATTCTTACTACTGCTGTGTTTCTTGG 23868855 Query 188554 TCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAA 188596 || ||| ||| |||||| || || |||||||||||||| ||| Sbjct 23868854 GCTAACTGCATATACTCTGCAGTCGAAGAGAGATTTCAGCAAA 23868812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816962309680