Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq38 125 9e-24 seq74 111 2e-19 seq68 109 7e-19 seq78 89.7 7e-13 >seq38 Length=209695328 Score = 125 bits (138), Expect = 9e-24 Identities = 125/161 (78%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 36156 AACATGCGAAAT-CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 36214 |||||| | ||| | | |||| |||| ||||| ||||| | || ||||| || || Sbjct 163297273 AACATGTGTAATGCTCTATGTATTACCTCATCTCTGCTAATGAGCTCATTGGAGAAAGTC 163297332 Query 36215 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 36274 ||||| ||||| ||||| | ||| || ||||||||||||| ||||| ||||| || ||| Sbjct 163297333 AGTCCAGGCATCAGGCCTCTCTTCTTCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAG 163297392 Query 36275 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 36315 || |||||||| ||||| |||||||||| | |||||| || Sbjct 163297393 AAGATTCCTTCCACTGCAGCAAAGGCAACCACTCTCTCCCC 163297433 >seq74 Length=41239083 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | || || ||||| |||||||| ||||||| || | || | Sbjct 8041925 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 8041866 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | |||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||| | Sbjct 8041865 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAG 8041806 Query 36300 C 36300 | Sbjct 8041805 C 8041805 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||| | || || || || | ||||| |||||||| |||||||||||||| ||||| Sbjct 8038873 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 8038814 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || || || || || ||||| | ||| || |||||||| |||||| Sbjct 8038813 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTAATCTGCACTTCT 8038768 >seq68 Length=189227759 Score = 109 bits (120), Expect = 7e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || ||||| || | |||| | | | ||| || | |||||||||||||||||| Sbjct 23865875 TTACTTTTTATTGAATGCCTCCAGTAAACGCAGCAGGTGTAGGAACAGATTGATGATATC 23865934 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 ||| |||| ||||| || || || | ||| |||||||| || ||||| || || | | Sbjct 23865935 CAAATAGAGGTTGATTGAAGCCAATATATACTCTTCAGGGGACAGCTTGTGCATCACCAA 23865994 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || |||||||| || || ||||| ||||| | ||| || || ||| | | ||||| Sbjct 23865995 ATGAGTGTCATAAATGATAAATCCACAGAACAGAAGAGCTCCGCCAGCTGCAAATACCAG 23866054 Query 9407 CTCCACTGTTTCACT 9421 |||| ||| ||||| Sbjct 23866055 TTCCATTGTCTCACT 23866069 Score = 102 bits (112), Expect = 1e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 || |||||| ||| |||||||||||||| || || |||||||||||||| || ||||| Sbjct 23868801 CCAGCTCCACATTTGCTGAAATCTCTCTTCGACTGCAGAGTATATGCAGTTAGCCCAAGA 23868860 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593 ||||| |||||||| || || |||||||| | || | |||||||||||| Sbjct 23868861 AACACAGCAGTAGTAAGAATAAAAGCTTGTAGGACAATGGATACATCATAGAAA 23868914 >seq78 Length=264820526 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 || |||||||| ||||||||||||||||| || || | || | || || | || || Sbjct 1192773 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGC 1192714 Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179 ||||| || || || ||||| || | |||||| ||| | | ||||| | |||||||| Sbjct 1192713 TCCTCCTTCCCCGTGTTCTTCTTCAAATCGAGAAACTCAAAGATATCCAAGTGCCACGGC 1192654 Query 66180 TCCAAGTATATGGC 66193 |||| ||| ||||| Sbjct 1192653 TCCAGGTAAATGGC 1192640 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || ||||| || ||||| || ||||| ||||| |||||||| |||||||| | |||||| Sbjct 1190053 GTGCCCGCGTTGAATAAAGTGGGAGAGGCGTGGGTAAACCACTTTTCAGACAAGAGATTG 1189994 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 ||||| ||||| | | || || || || || || || || | ||| | ||| | | Sbjct 1189993 TACGTTTCAATTGAGGCATCAATGTCGTCTTTGTGGATGCCCACAGAGACCCTCATCAGC 1189934 Query 66576 ATGTGCTGAGG 66586 |||||||| || Sbjct 1189933 ATGTGCTGGGG 1189923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172133600040