Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq58 93.3 4e-14 >seq58 Length=12078735 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || | ||| | || || || || || ||||| || || Sbjct 9616986 GCCACCCCGGAGACGCAGCACCAGGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGA 9617045 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||| ||||| || |||||| ||||||| | ||||| || || || Sbjct 9617046 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 9617105 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||||||||| ||| | || | || | | || | ||||| ||||||| | Sbjct 9617106 AATGCCTTCTTTGTC-CTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 9617164 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | ||| | |||||||| |||| || || || || || |||||| Sbjct 9617165 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATA 9617214 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || || || || || ||||| || || || |||| Sbjct 9617226 ACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCC 9617285 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || |||||| ||||||| | ||||| || || || ||||||||||| Sbjct 9617286 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTT 9617345 Query 139669 GTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 ||| ||| | || | || | | || | ||||| ||||||| ||||| | ||| | Sbjct 9617346 GTC-CTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGA 9617404 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||| |||| || || || || || |||||| Sbjct 9617405 TGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATA 9617442 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || || || || || ||||| || || || |||| Sbjct 9617454 ACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCC 9617513 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || |||||| ||||||| | ||||| || || || ||||||||||| Sbjct 9617514 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTT 9617573 Query 139669 GTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 ||| ||| | || | || | | || | ||||| ||||||| ||||| | ||| | Sbjct 9617574 GTC-CTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGA 9617632 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||| |||| || || || || || |||||| Sbjct 9617633 TGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATA 9617670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || || || || || ||||| || || || |||| Sbjct 9617682 ACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCC 9617741 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || |||||| ||||||| | ||||| || || || ||||||||||| Sbjct 9617742 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTT 9617801 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | ||||| ||||||| || || | ||| | Sbjct 9617802 GTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGAT 9617861 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || || ||||| Sbjct 9617862 TGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 9617897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063497735200