Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq74 120 3e-22 seq38 102 8e-17 >seq74 Length=41239083 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||||| || || || || ||||| || | ||| ||||| ||||||| ||| | Sbjct 8041925 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 8041866 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | |||||||| || | ||||| || || |||||||| ||||| || ||||| ||||| | Sbjct 8041865 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAG 8041806 Query 14014 CTATTAATCGTTCTCC 14029 ||| || |||||||| Sbjct 8041805 CTACTACACGTTCTCC 8041790 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 || || || || ||||| | |||||||| | ||||| || ||||||||||| || || Sbjct 8043272 TTCGACATGACTCCCATCCTCTGATATTCTCCTACTCTCTTCTCAAAGAAGTTTGTCTTG 8043213 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 ||||| ||||| || || |||||||| ||||||||||| Sbjct 8043212 CCTTCAAGTGAGATGTTCTCCATAAAGTCAAATGGATT 8043175 >seq38 Length=209695328 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||| || || || || || || | ||| ||||||| |||| || | Sbjct 163297298 CCTCATCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 163297357 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||||||||| |||||||| || || || ||||| ||||| || ||||||||||| | Sbjct 163297358 TCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 163297417 Query 14014 C 14014 | Sbjct 163297418 C 163297418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727514275400