Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq38 129 8e-25 seq74 114 2e-20 seq78 98.7 1e-15 >seq38 Length=209695328 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | || ||||| || || ||||| ||||| ||||| | ||| | Sbjct 163297298 CCTCATCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 163297357 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||| | ||||| ||||| || |||||||||||||| ||||| ||||||| Sbjct 163297358 TCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 163297417 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | |||||| || Sbjct 163297418 CAACCACTCTCTCCCC 163297433 >seq74 Length=41239083 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | || || ||||| |||||||| ||||||| || | || | Sbjct 8041925 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 8041866 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | |||||| || || ||||| || |||||||||||||||||||||||||| ||||| | Sbjct 8041865 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAG 8041806 Query 42207 C 42207 | Sbjct 8041805 C 8041805 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||| | || || || || | ||||| ||||||||||||||||||||||| ||||| Sbjct 8038873 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 8038814 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 ||||| || || || ||||| | || || |||| ||| |||||| Sbjct 8038813 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTAATCTGCACTTCT 8038768 >seq78 Length=264820526 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 || |||||||| ||||||||||||||||| || || | || || || || | || ||| Sbjct 1192773 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGC 1192714 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || || || ||||| || | |||||| ||| | | ||||| | |||||||| Sbjct 1192713 TCCTCCTTCCCCGTGTTCTTCTTCAAATCGAGAAACTCAAAGATATCCAAGTGCCACGGC 1192654 Query 72142 TCCAAGTATATGGC 72155 |||| ||| ||||| Sbjct 1192653 TCCAGGTAAATGGC 1192640 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || ||||| || ||||| || ||||| ||||| |||||||| |||||||||| |||||| Sbjct 1190053 GTGCCCGCGTTGAATAAAGTGGGAGAGGCGTGGGTAAACCACTTTTCAGACAAGAGATTG 1189994 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 ||||| ||||| | | || || || || || || || || | ||| | ||| | | Sbjct 1189993 TACGTTTCAATTGAGGCATCAATGTCGTCTTTGTGGATGCCCACAGAGACCCTCATCAGC 1189934 Query 72538 ATATGCTGAGG 72548 || ||||| || Sbjct 1189933 ATGTGCTGGGG 1189923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138520471560