Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq58 158 3e-33 seq73 149 1e-30 seq74 111 4e-19 >seq58 Length=12078735 Score = 158 bits (174), Expect = 3e-33 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || |||||||| || || | || ||||| || || || ||| Sbjct 9617017 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 9617076 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || ||||| || || |||||||| ||||||||||| || || Sbjct 9617077 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGAATCTTAGCCTTC 9617136 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || ||||| || || || ||||| ||||| || || Sbjct 9617137 ACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 9617196 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 9617197 TTCACAAAGATCTGCAT 9617213 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || ||||| ||||| || || |||||| Sbjct 9617212 ATACCACCCCTGAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCA 9617271 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || |||||||| || ||||| Sbjct 9617272 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 9617331 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||||||||| || || ||||| || | ||| || || || || Sbjct 9617332 GGAATGCCTTCTTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCA 9617391 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || ||||| |||||||| Sbjct 9617392 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 9617441 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || ||||| ||||| || || |||||| Sbjct 9617440 ATACCACCCCTGAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCA 9617499 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || |||||||| || ||||| Sbjct 9617500 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 9617559 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||||||||| || || ||||| || | ||| || || || || Sbjct 9617560 GGAATGCCTTCTTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCA 9617619 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || ||||| |||||||| Sbjct 9617620 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 9617669 >seq73 Length=52630461 Score = 149 bits (164), Expect = 1e-30 Identities = 130/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||| ||| |||| |||||||| |||||| | || || | || |||||| Sbjct 10810013 GCTTTATGGTGGTACTATGTCTCCAAAGGAATTGAATACTTGGACACAGTATTTTTCATC 10810072 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || || ||||||||||| ||||| ||||| || ||||| |||||||||| || ||||| Sbjct 10810073 CTGCGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTTTATCATCATTACACCATGTTC 10810132 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAA 78649 || ||| | ||||| || || || ||| | |||||||||||| Sbjct 10810133 ACCTTGTGGTGGATTGGAATCAAGTGGGTTGCAGGAGGACAA 10810174 >seq74 Length=41239083 Score = 111 bits (122), Expect = 4e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || |||||||| || |||||||| || |||||||| Sbjct 8041790 GGAGAACGTGTAGTAGCTTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 8041849 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||||||||||||||||| | ||||| ||| | ||||| ||||| || | Sbjct 8041850 TCCATTTTTTGGTTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAGCTC 8041909 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 8041910 ATCAGTAGAGATGA 8041923 Score = 100 bits (110), Expect = 7e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 ||||| || |||||| | ||||| | |||||||| || |||||||| || || ||||| Sbjct 8038766 CAAGAAGTGCAGATTACAGAAGCTCGCTGTTTTTATGGCTTCCAGATTGCCATGGAAAAC 8038825 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGAT 269023 ||||||||||| ||||||||||| | ||||| ||||| ||| | ||| Sbjct 8038826 ATTCATTCAGAAATGTACAGTCTGCTTATAGACACTTACATAAAAGAT 8038873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397205064348