Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq39 152 7e-32 seq57 138 2e-27 >seq39 Length=85626906 Score = 152 bits (168), Expect = 7e-32 Identities = 213/299 (71%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||||| || || || ||| | ||||| || || | | ||| | ||||| || Sbjct 50687749 AAGGGACAACCCTTTACATTGTTGCAGACGAGTTTTTGCAGGGAGGCAGTGTTGACTATT 50687808 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 |||| || || ||| || || ||||| || |||||||| | || |||||||| | Sbjct 50687809 TCAAATCCTACTCTTCCACCAAAAGTGCTAGGCTTCCAGTACTCAGGAGAGCAGATAGCA 50687868 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| |||||||| | || || || || || ||||| | ||| ||||||| ||| Sbjct 50687869 TTTCCCATCAGGCCTTTCAACGAGAATGGTGCTCCAAGCTCTACCATGGTCTCACCAAAG 50687928 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 ||||| ||||||||||||||||| || | || | |||| ||||| ||| || ||| Sbjct 50687929 ATGGCTCCTGGACGGGGCTTTTCCACTAACAGACCAGGATACAGCTCCATAGCATCAATG 50687988 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGTTTTATTAATAAA 8988 ||||| ||||| | | |||||| || ||||| ||||||||| |||||| ||| Sbjct 50687989 TCTCCATAAAGCTCTTCCAATTCGGCTGCCATTTCTTTTTCTCCTAAAATATTAACAAA 50688047 Score = 96.9 bits (106), Expect = 5e-15 Identities = 166/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| || || || || | |||| ||| |||||||||||| || | || || Sbjct 50690140 ATGAGTCTGGTAGTTTGGAATAACCGTTCATCATCCCATTCTGGATGCTCCTGCTTAAGG 50690199 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||| ||||||||||| || ||||| |||||||| | ||| || Sbjct 50690200 ATGTCACAGACCCGGTTGTGCTCCCTGAGCCATATGGTAGCATACATCATTAAACCTGGG 50690259 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||| ||||| | || || || |||| | | | | || || || | |||||| Sbjct 50690260 ACCAGACCAAACACTTCCTGTCCTACAGAGAATTGTAGGTGCTCAGGAACATGAGGAGGA 50690319 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 || | ||| | | || ||| || || | || || |||||||| || |||| ||| Sbjct 50690320 TATAGCATTTCTGCTTGAGTATCCTTCACTGTTGGAGGGTACATTTCTCCACCAATCATC 50690379 Query 9862 T 9862 | Sbjct 50690380 T 50690380 >seq57 Length=27084703 Score = 138 bits (152), Expect = 2e-27 Identities = 136/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 ||||||||||||||||| |||||||| | |||||||||||| |||| ||| || || Sbjct 23767897 CCGCCGAAGGTGCTGGGCTTCCAGTACTCGGGGGAGCAGATGGGGTTCCCCAGCAGCCCC 23767838 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 |||||||| || || ||||| | ||| | |||||||| || ||||||||||||| | Sbjct 23767837 TTGAGGGAGAAGGGGGCCCCGATCTCCACCATGCTCTCCCCAAAGATGGCGTTGGCTTGC 23767778 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 ||||| |||| || | || | ||| ||||||| || | |||||| ||||| || Sbjct 23767777 GGCTTCTCCAGCAGCAGCCCCGGGTAGAACTCCAGGGCATTGATGTCGCCGTACAG 23767722 Score = 109 bits (120), Expect = 8e-19 Identities = 175/249 (70%), Gaps = 8/249 (3%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | |||||| || || ||||| || || || ||||| | ||| || || Sbjct 23766199 TCACCGATGAGGATGAGCCGGGTCGTCTGGAAGAGCTGCTCGTCGCCCCACGTCGGGTGC 23766140 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | ||||| | ||||| || | |||||| || | |||||||| || ||||||||| Sbjct 23766139 TCCTGCTTCAGCAGGTCGCAGACGCGGTTGTGCTCGCGGAGCCAGAGGGTCGCGTACATC 23766080 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTT---CG 9786 || || || |||| ||| ||||| |||| || || || ||||| || | | | || Sbjct 23766079 ATCAGCCCGGGCAGCAGCCCAAACACCTCCTGGCCCACGGCCAGCTGCTTCTCCTGGCCG 23766020 Query 9787 G-GCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACAT 9845 | || || ||| ||||||||||||||| | | || |||| |||||| |||| Sbjct 23766019 GTGCCGTTGGGG----TAGATCATGTGCACCGGCGCCTCGAGCACCGTGGGGGGGTACAC 23765964 Query 9846 TTCACCGTC 9854 || ||||| Sbjct 23765963 CTCCCCGTC 23765955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708524082618640