Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq68 123 4e-24 seq75 84.2 3e-12 >seq68 Length=189227759 Score = 123 bits (136), Expect = 4e-24 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || |||||||| || || Sbjct 52796559 CTGCGGGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCTCGGCGCGGC 52796618 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| | || || | |||| || |||| || | || | ||| |||| Sbjct 52796619 GGCGTGAAGCGCATTTCCGGCCTCATCTACGAGGAGACCCGCGGGGTGCTCAAGGTCTTT 52796678 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| || |||||||| || || ||||| ||| Sbjct 52796679 CTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGAGCACGCCAAGCGCAAGACCGTC 52796738 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 ||| ||||||| | ||||| || | || || || ||||||| Sbjct 52796739 ACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCGTA 52796781 Score = 123 bits (136), Expect = 4e-24 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || |||||||| || || Sbjct 52803951 CTGCGGGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCTCGGCGCGGC 52803892 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| | || || | |||| || |||| || | || | ||| |||| Sbjct 52803891 GGCGTGAAGCGCATTTCCGGCCTCATCTACGAGGAGACCCGCGGGGTGCTCAAGGTCTTT 52803832 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| || |||||||| || || ||||| ||| Sbjct 52803831 CTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGAGCACGCCAAGCGCAAGACCGTC 52803772 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 ||| ||||||| | ||||| || | || || || ||||||| Sbjct 52803771 ACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCGTA 52803729 >seq75 Length=82161327 Score = 84.2 bits (92), Expect = 3e-12 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 16475 ATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGA 16534 |||||||||| | | || || ||||||| |||||| | || |||| |||||||| Sbjct 36104126 ATCACCAAGCTGGACAGCCACCGCCTGGCTCAGCGTGGTAGCGTGAAGCTCGTCTCTGGC 36104185 Query 16535 TTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGAT 16594 || ||| |||||| | | || ||||| | ||| | ||| | |||||||||| Sbjct 36104186 TTCATCTTCCAAGAGAGCCAGGGGGTGCTGAAGGTTTTCTTGGAGAATGCTATCCATGAT 36104245 Query 16595 GCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTA 16653 || || ||| | ||||| || || | ||||| |||||| |||||||| | ||||| Sbjct 36104246 GCCGTCACCTACATGGAGCATGCCAAGTGCAAGACCGTCACCACCATGGATGTGGTCTA 36104304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075125941133