Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq38 138 1e-27 seq74 114 2e-20 seq78 93.3 5e-14 >seq38 Length=209695328 Score = 138 bits (152), Expect = 1e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| || || ||||| || || ||||| ||||| ||||| | ||| | Sbjct 163297298 CCTCATCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 163297357 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||||| ||| || ||||| || |||||||||||||| ||||||||||||| Sbjct 163297358 TCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 163297417 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | |||||| || Sbjct 163297418 CAACCACTCTCTCCCC 163297433 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 33691 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 33750 |||||||| || ||||| || |||||||||||||| |||| |||||| |||||||||| Sbjct 163307566 TTTTCATTTACAATTCCATCGCTGGCTGCAAAAAATGCCAGGACATGTGATATAAAATAT 163307625 Query 33751 TTTTCGTCTGGTGTTAGTTTATTCCA 33776 ||||| |||| | | | || ||||| Sbjct 163307626 TTTTCTTCTGATTTCAACTTGTTCCA 163307651 >seq74 Length=41239083 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||||| || || || || ||||| |||||||| ||||||| || | || | Sbjct 8041925 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 8041866 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | |||||| ||||| || || || |||||||||||||||||||||||||| ||||| | Sbjct 8041865 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAG 8041806 Query 33446 C 33446 | Sbjct 8041805 C 8041805 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||| | ||||| || || | ||||| |||||||| |||||||||||||| ||||| Sbjct 8038873 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 8038814 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 ||||| || || || ||||| | ||| || |||||||| |||||| | ||| || || Sbjct 8038813 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTAATCTGCACTTCTTGGCTAAAACGCTC 8038754 Query 33684 CGCCAAA 33690 | || || Sbjct 8038753 CACCTAA 8038747 >seq78 Length=264820526 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 || |||||||| ||||||||||||||||| || || | || || || || | || || Sbjct 1192773 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGC 1192714 Query 63276 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63335 ||||| || || || ||||| || | |||||| ||| | | ||||| | |||||||| Sbjct 1192713 TCCTCCTTCCCCGTGTTCTTCTTCAAATCGAGAAACTCAAAGATATCCAAGTGCCACGGC 1192654 Query 63336 TCCAAGTATATGGC 63349 |||| ||| ||||| Sbjct 1192653 TCCAGGTAAATGGC 1192640 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || ||||| || ||||| || ||||| ||||| |||||||| |||||||| | |||||| Sbjct 1190053 GTGCCCGCGTTGAATAAAGTGGGAGAGGCGTGGGTAAACCACTTTTCAGACAAGAGATTG 1189994 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 ||||| ||||| | | || || || || || || || || | ||| | ||| | | Sbjct 1189993 TACGTTTCAATTGAGGCATCAATGTCGTCTTTGTGGATGCCCACAGAGACCCTCATCAGC 1189934 Query 63732 ATGTGCTGAGG 63742 |||||||| || Sbjct 1189933 ATGTGCTGGGG 1189923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946569265960