Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq58 93.3 4e-14 >seq58 Length=12078735 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||| || || | ||||| || | || ||| | ||||| ||| | Sbjct 9617901 CAACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACAATCACCCTGGAAGTTGAGCC 9617842 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||| ||| | || || ||||| |||||||||||||| || || || Sbjct 9617841 CAGTGACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGA 9617782 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||||| ||||| | | |||||||| || ||||||| | | | | | || || Sbjct 9617781 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 9617722 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || ||||| || Sbjct 9617721 CAACATCCAGAAGGAATCCAC 9617701 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || ||| | || || ||| ||| Sbjct 9617213 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 9617154 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || |||||| |||||||||||||| || || || || Sbjct 9617153 GACACCATTGAGAATGTGAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 9617094 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | |||||||| || ||||||| | | | | | || || ||| Sbjct 9617093 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 9617034 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 9617033 ATCCAGAAGGAATCCAC 9617017 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || ||| | || || ||| ||| Sbjct 9617441 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 9617382 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || |||||| |||||||||||||| || || || || Sbjct 9617381 GACACCATTGAGAATGTGAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 9617322 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | |||||||| || ||||||| | | | | | || || ||| Sbjct 9617321 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 9617262 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 9617261 ATCCAGAAGGAATCCAC 9617245 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || ||| | || || ||| ||| Sbjct 9617669 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 9617610 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || |||||| |||||||||||||| || || || || Sbjct 9617609 GACACCATTGAGAATGTGAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 9617550 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | |||||||| || ||||||| | | | | | || || ||| Sbjct 9617549 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 9617490 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 9617489 ATCCAGAAGGAATCCAC 9617473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935575572555