Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq58 113 4e-20 >seq58 Length=12078735 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||| ||||| || ||||||||||| | | Sbjct 9616987 CCACCCCGGAGACGCAGCACCAGGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 9617046 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || ||||| ||| | || |||| ||| ||||| || Sbjct 9617047 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 9617106 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| |||||||| ||| | |||||| | | | ||||| | |||||| Sbjct 9617107 ATGCCTTCTTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 9617166 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || ||||| || || ||||| |||||||| Sbjct 9617167 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 9617213 Score = 111 bits (122), Expect = 1e-19 Identities = 157/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||| ||||| || ||||||||||| | || ||| | | || Sbjct 9617685 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 9617744 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| || | ||| |||||||| Sbjct 9617745 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 9617804 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | |||||| ||||| |||||| Sbjct 9617805 CTGGATCTTAGC--CTTCACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATT 9617862 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || ||||| || || ||||| |||||||| ||| Sbjct 9617863 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 9617901 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||| ||||| || ||||||||||| | || ||| | | || Sbjct 9617229 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 9617288 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| || | ||| |||||||| Sbjct 9617289 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 9617348 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 ||| | |||||| | | | ||||| | |||||| |||| ||||||||| Sbjct 9617349 CTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 9617408 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || || ||||| |||||||| Sbjct 9617409 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 9617441 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||| ||||| || ||||||||||| | || ||| | | || Sbjct 9617457 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 9617516 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| || | ||| |||||||| Sbjct 9617517 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 9617576 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 ||| | |||||| | | | ||||| | |||||| |||| ||||||||| Sbjct 9617577 CTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 9617636 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || || ||||| |||||||| Sbjct 9617637 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 9617669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087600102190