Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq74 118 7e-22 seq70 113 3e-20 seq80 104 2e-17 seq38 104 2e-17 seq78 100 2e-16 seq40 100 2e-16 seq58 98.7 7e-16 seq79 96.9 2e-15 seq50 91.5 1e-13 >seq74 Length=41239083 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 31042766 AAGCCCTTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGGCAGTGGGAATCTCGT 31042707 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| ||||||||||||||||| || Sbjct 31042706 TCATCCGTTCATGCTCGTCACTAATTAGATGATGA 31042672 >seq70 Length=183555969 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||| ||||||| ||| ||||| || |||||||| Sbjct 139266603 AAGCCCATTCCCTTGGCTGTGGTTTCACTAGATAATAGGTAGGGACAGTGGGAATCTCGT 139266662 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| |||||||||||||||||||| Sbjct 139266663 TCATCCATTCATGCACGTCACTAATTAGATGACGA 139266697 >seq80 Length=96076944 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| Sbjct 63953381 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCGGTCTCGT 63953440 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 63953441 GCCAGTATTTAGCCTTA 63953457 >seq38 Length=209695328 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||| ||||||||||||||||||||||||| ||||| || |||||| | Sbjct 120589189 AAGCCCATTCCCCTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCAT 120589130 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||| ||||| ||||||||||||||| || Sbjct 120589129 TCATCCATTCCTGCGCATCACTAATTAGATGATGA 120589095 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| | Sbjct 120585509 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTTGT 120585450 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 120585449 GCCGGTATTTAGCCTTA 120585433 >seq78 Length=264820526 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||| |||||||||||| |||||||||||| ||||| || ||||| || Sbjct 27592278 AAGCCCAATCCTTTGGCTGTGGTTATGCTAGATAGTAGGTAGGGACAGTGGGAATCTTGT 27592337 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| |||||||||||||||||||| Sbjct 27592338 TCATCCATTCATGCACGTCACTAATTAGATGACGA 27592372 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||| ||||||| | |||||||||| |||||||||||| Sbjct 97911585 CTCTCTCTTCAAAGTTCTTTTCAAATTTCCCTTATGGTACTTGTTGACTATCGGTCTCGT 97911526 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 97911525 GCTGGTATTTAGCCTTA 97911509 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||| || |||||| ||||| ||||| || ||||| || Sbjct 105060476 AAGCCCATTCCCTTGGCTGTGGCTTGGCTAGAAAGTAGGTAGGGACAGTGGGAATCTTGT 105060417 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| || ||||||||||||||| || Sbjct 105060416 TCATCCATTCATGTGCATCACTAATTAGATGATGA 105060382 Score = 91.5 bits (100), Expect = 1e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| ||||| ||||| Sbjct 105046207 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCAGTCTCAT 105046148 Query 20007 GGTAATATTTAGCCT 20021 | | |||||||||| Sbjct 105046147 GCCAGTATTTAGCCT 105046133 >seq40 Length=78824398 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||||||||||||||| ||||||| |||||||||| ||| | || ||||| || Sbjct 38050739 AAGCCCGTTCCCTTGGCTATGGTTTCATTAGATAGTAGGTAGTGACAGTGGGAATCTTGT 38050798 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||| ||||||||||||||| || Sbjct 38050799 TCATCCATTCATGCGCATCACTAATTAGATGATGA 38050833 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| ||||||||||||||| |||||||||| || ||||||||| ||||| |||| | Sbjct 38054351 CTCTATCTTCAAAGTTCTTTCAAACTTTCCCTTACAGTACTTGTTGACTATCAGTCTTGT 38054410 Query 20007 GGTAATATTTAGCCTTA 20023 | || |||||||||||| Sbjct 38054411 GCTAGTATTTAGCCTTA 38054427 >seq58 Length=12078735 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| || | ||||| ||||| || || ||| ||||| || || ||||| |||| Sbjct 9617669 TACCACCCCTGAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 9617728 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || || || ||||| || || | || || || | || Sbjct 9617729 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGG 9617788 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||||| || || ||||||||||| | || || | |||| Sbjct 9617789 GAATGCCTTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 9617848 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| | || || || || || |||| ||| ||||| || ||||||||||| Sbjct 9617849 CTTCCAGGGTGATTGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 9617900 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| || | ||||| ||||| || || ||| ||||| || || ||||| |||| Sbjct 9617213 TACCACCCCTGAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 9617272 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || || || ||||| || || | || || || | || Sbjct 9617273 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGG 9617332 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||||| ||| || ||||||||||| | || || | |||| Sbjct 9617333 GAATGCCTTCTTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 9617392 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| ||| ||||| || |||||||| Sbjct 9617393 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 9617441 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| || | ||||| ||||| || || ||| ||||| || || ||||| |||| Sbjct 9617441 TACCACCCCTGAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 9617500 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || || || ||||| || || | || || || | || Sbjct 9617501 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGG 9617560 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||||| ||| || ||||||||||| | || || | |||| Sbjct 9617561 GAATGCCTTCTTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 9617620 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| ||| ||||| || |||||||| Sbjct 9617621 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 9617669 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||||| ||||| || |||||| ||||| || || ||||| |||||| Sbjct 9616987 CCACCCCGGAGACGCAGCACCAGGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 9617046 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || || ||||| || || | || || || | ||| Sbjct 9617047 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 9617106 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| ||| || ||||||||||| | || || | ||||| Sbjct 9617107 ATGCCTTCTTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 9617166 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||| ||| ||||| || |||||||| Sbjct 9617167 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 9617213 >seq79 Length=105324486 Score = 96.9 bits (106), Expect = 2e-15 Identities = 76/91 (84%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 25906 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAAT 25960 ||||||||||||||| ||||| |||||||||||| || || || ||||||||| || Sbjct 28604566 CCGTTCCCTTGGCTGGGGTTTTGCTAGATAGTAGGTAAGGACAGTGGGAATCTCGTTCAT 28604507 Query 25961 CCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||||| | |||||||||||||||| || Sbjct 28604506 CCATTCATGTGTGTCACTAATTAGATGATGA 28604476 >seq50 Length=71552732 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| || ||||||||||||||||||||||||| || || ||||| || ||| |||| Sbjct 52962954 AAGACCATTCCCTTGGCTGTGGTTTCGCTAGACAGCAGGTAGGGACAGTGGGAATTTCGT 52962895 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| | ||||||| ||||||| || Sbjct 52962894 TCATCCATTCATGCACATCACTAAGTAGATGATGA 52962860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946869344311