Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq38 125 9e-24 seq74 111 2e-19 seq78 93.3 5e-14 >seq38 Length=209695328 Score = 125 bits (138), Expect = 9e-24 Identities = 125/161 (78%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 32659 AACATGCGAAAT-CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 32717 |||||| | ||| | | |||| |||| ||||| ||||| | || ||||| || || Sbjct 163297273 AACATGTGTAATGCTCTATGTATTACCTCATCTCTGCTAATGAGCTCATTGGAGAAAGTC 163297332 Query 32718 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 32777 ||||| ||||| ||||| | ||| || ||||||||||||| ||||| ||||| || ||| Sbjct 163297333 AGTCCAGGCATCAGGCCTCTCTTCTTCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAG 163297392 Query 32778 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 32818 || |||||||| ||||| |||||||||| | |||||| || Sbjct 163297393 AAGATTCCTTCCACTGCAGCAAAGGCAACCACTCTCTCCCC 163297433 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 33048 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 33107 |||||||| || ||||| || |||||||||||||| |||| |||||| |||||||||| Sbjct 163307566 TTTTCATTTACAATTCCATCGCTGGCTGCAAAAAATGCCAGGACATGTGATATAAAATAT 163307625 Query 33108 TTTTCGTCTGGTGTTAGTTTATTCCA 33133 ||||| |||| | | | || ||||| Sbjct 163307626 TTTTCTTCTGATTTCAACTTGTTCCA 163307651 >seq74 Length=41239083 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | || || ||||| |||||||| ||||||| || | || | Sbjct 8041925 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 8041866 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | |||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||| | Sbjct 8041865 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAG 8041806 Query 32803 C 32803 | Sbjct 8041805 C 8041805 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||| | || || || || | ||||| |||||||| |||||||||||||| ||||| Sbjct 8038873 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 8038814 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 || || || || || || || | ||| || |||||||| |||||| Sbjct 8038813 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTAATCTGCACTTCT 8038768 >seq78 Length=264820526 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 || |||||||| ||||||||||||||||| || || | || || || || | || || Sbjct 1192773 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGC 1192714 Query 63131 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63190 ||||| || || || ||||| || | |||||| ||| | | ||||| | |||||||| Sbjct 1192713 TCCTCCTTCCCCGTGTTCTTCTTCAAATCGAGAAACTCAAAGATATCCAAGTGCCACGGC 1192654 Query 63191 TCCAAGTATATGGC 63204 |||| ||| ||||| Sbjct 1192653 TCCAGGTAAATGGC 1192640 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 ||||||| | ||| || ||||||||||| | || || || || || || || || || | Sbjct 1180734 CACTAAACACTTTCTTGGTTTCTTTGTGCAAGTTGGAGACTGCGATCCTTGCTGCCAGGA 1180675 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || |||| ||||| || || || | || || ||||| || |||| Sbjct 1180674 TGGCATAGTCGGGGTGTTTGGTAGTCAGGGTCGCAGCCGTCTCTGCAGCCAGCGTATCCA 1180615 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||||| || || ||||| | || | |||||||| || ||||| Sbjct 1180614 GCTCTACTGTGGTGACACCGCTGTAAAGACCTTGGATCACTTTCAT 1180569 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || ||||| || ||||| || ||||| ||||| |||||||| |||||||| | |||||| Sbjct 1190053 GTGCCCGCGTTGAATAAAGTGGGAGAGGCGTGGGTAAACCACTTTTCAGACAAGAGATTG 1189994 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 ||||| ||||| | | || || || || || || || || | ||| | ||| | | Sbjct 1189993 TACGTTTCAATTGAGGCATCAATGTCGTCTTTGTGGATGCCCACAGAGACCCTCATCAGC 1189934 Query 63587 ATGTGCTGAGG 63597 |||||||| || Sbjct 1189933 ATGTGCTGGGG 1189923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631358447600