Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq78 100 5e-16 seq38 87.8 3e-12 >seq78 Length=264820526 Score = 100 bits (110), Expect = 5e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGC-TGGGCCAGCTT 244380 || ||||||||||| | |||||| || ||| || || || | || | | ||| |||| Sbjct 1196482 CCTTTGCTGACGGGACAGCCCTCATACGTCTCATACGG-CCCTTGCTCTTTGGCGAGCTC 1196424 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCG 244440 ||||| | || | ||| ||||||| || ||||| |||||| || ||||| | | Sbjct 1196423 GCAGCTGGCCTCCAAAGCGCCGTAGTAAATAGTCTCAAAGATCTGCTGGTTCAGGAGCTG 1196364 Query 244441 GGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCAC 244500 ||||| | |||||| | ||||| |||||| |||| ||||| || ||||| Sbjct 1196363 GGCCTCAGGACTCTCAAAGGGGTATCTCATCAGGATGAAGGCGTCTGCCAGGCCTTGCAC 1196304 Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 |||||||| ||||| | ||| ||| | ||||||||| Sbjct 1196303 ACCGATGCCTATGGGGCGGTGGCGCATATTGGAGCGC 1196267 Score = 96.9 bits (106), Expect = 7e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| | ||||||||| || || ||||||||||| |||||||||||| | | |||| Sbjct 1192773 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGC 1192714 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| || ||||||||| ||| || | ||| ||||||| || | |||||| ||| Sbjct 1192713 TCCTCCTTCCCCGTGTTCTTCTTCAAATCGAGAAACTCAAAGATATCCAAGTGCCACGGC 1192654 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGG 245148 |||| ||| | || | || ||||| Sbjct 1192653 TCCAGGTAAATGGCAAAAGCCCCGGG 1192628 Score = 96.9 bits (106), Expect = 7e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| || | ||||||||| || || || ||||| ||||| ||||||||||||| Sbjct 1194016 CCACCTCATCTTTGCTGGTGTACTCCACTATTTCCGTGCACAGGTTGCTGCACTTGATGG 1193957 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| ||| || | ||||||||| ||||| | || Sbjct 1193956 TGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTACAAGAGTCCTTGTACAGCATATAAGGGG 1193897 Query 244824 CCCCGGTCTCGAGCTGGG 244841 |||||||| ||||| Sbjct 1193896 TACCGGTCTCAGTCTGGG 1193879 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 ||||||||||||||| || || || ||||| ||||| ||| || | |||||||| Sbjct 1208577 CACCTGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTAGTATAGGGCTCGAT 1208518 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 | || | ||||||| ||||| |||||| ||||| ||||| || || | |||| Sbjct 1208517 GGATTCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGGAGAAAGGAGCAA 1208458 Query 244216 ACTGTTCCTCACGCCGTGCCT 244236 |||||||| || |||| ||| Sbjct 1208457 GCTGTTCCTAACACCGTACCT 1208437 >seq38 Length=209695328 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || || ||||||||||| || | || || Sbjct 163297433 GGGGAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGAATCTTCTTCTCAGGATCTTTTGCT 163297374 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||| || ||||| ||| ||| ||| | |||||| ||||| || ||||| || || || Sbjct 163297373 GCCATATTTTGGCTGAAGAAGAGAGGCCT-GATGCCTGGACTGACTTTCTCCAATGAGCT 163297315 Query 42815 CATCAGCAGGGACGAGG 42831 ||| ||||| || |||| Sbjct 163297314 CATTAGCAGAGATGAGG 163297298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338243856560