Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq78 82.4 6e-11 >seq78 Length=264820526 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| | || | | |||||| Sbjct 76622800 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCGACCAAAGGAA 76622859 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 76622860 CCATAACTGATTTAATGAGCCATTCG 76622885 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| | || | | |||||| Sbjct 76622800 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCGACCAAAGGAA 76622859 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 76622860 CCATAACTGATTTAATGAGCCATTCG 76622885 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| | || | | |||||| Sbjct 76639713 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCAACCAAAGGAA 76639772 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 76639773 CCATAACTGATTTAATGAGCCATTCG 76639798 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| | || | | |||||| Sbjct 76639713 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCAACCAAAGGAA 76639772 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 76639773 CCATAACTGATTTAATGAGCCATTCG 76639798 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| | || | | |||||| Sbjct 77266196 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCGACCAAAGGAA 77266137 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 77266136 CCATAACTGATTTAATGAGCCATTCG 77266111 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| | || | | |||||| Sbjct 77266196 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCGACCAAAGGAA 77266137 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 77266136 CCATAACTGATTTAATGAGCCATTCG 77266111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062008024962