Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq39 122 1e-22 seq57 118 2e-21 >seq39 Length=85626906 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || ||||| || ||| | || ||| ||||||| || || || || || || | || ||| Sbjct 50690149 GTAGTTTGGAATAACCGTTCATCATCCCATTCTGGATGCTCCTGCTTAAGGATGTCACAG 50690208 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 |||| |||||| || || ||||||||||| || |||||||||||||| || || | |||| Sbjct 50690209 ACCCGGTTGTGCTCCCTGAGCCATATGGTAGCATACATCATTAAACCTGGGACCAGACCA 50690268 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 |||||||| | || || | || | || | || || || | || | ||| ||||| Sbjct 50690269 AACACTTCCTGTCCTACAGAGAATTGTAGGTGCTCAGGAACATGAGGAGGATATAGCATT 50690328 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 | | || || || || || || || || |||||||| || |||| Sbjct 50690329 TCTGCTTGAGTATCCTTCACTGTTGGAGGGTACATTTCTCCACCAAT 50690375 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 |||||| || || | || ||||||||||| || | || || || || | ||| ||||| Sbjct 50691956 ACCTTTAACACCCATGGGTGTAGGGCAGTCTCGTGCTACTGGTGGAAGGGCTCTTGTATA 50692015 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 ||||| || || ||||| ||||||||||| ||||| | || || ||||| || Sbjct 50692016 GTAGGAAAGGTTGGAAAAGGCTTCCCAGCTTTTGTAACTGTATTCACTATTGTATGTTGG 50692075 Query 10509 GGGACTGTCAATCATCTCGGACCTGGCTA 10537 |||||||||||||| | ||||| |||| Sbjct 50692076 GGGACTGTCAATCAAATGTGACCTTGCTA 50692104 Score = 87.8 bits (96), Expect = 3e-12 Identities = 125/174 (72%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||| | || | ||||||| |||| || || ||||| || || || |||| ||||||| Sbjct 50689043 TCAGGTAGAAGTGGATGCCAGTGGTACAGAGTGTTGAATTCAGCTGCAATTCTGTTCTGG 50689102 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 |||||||| ||| ||||| | ||| |||||||| | |||| ||| ||||| | Sbjct 50689103 TACTGAAACTTTTGGT--TAAACAGAAGCTCAGGGTCAAACTTCAGCTTGAAATGGTAGC 50689160 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGTAA 9724 | || | || || ||||| | | || | ||| || ||||| ||||| |||| Sbjct 50689161 CACTCAAGTGTTGCACATAGTCTTCAATAACAATCTTGATGGTCTCCCCTGTAA 50689214 >seq57 Length=27084703 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||||||||||||||| ||||||||| | |||||||||||| |||| ||| ||||| Sbjct 23767897 CCGCCGAAGGTGCTGGGCTTCCAGTACTCGGGGGAGCAGATGGGGTTCCCCAGCAGCCCC 23767838 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 || | ||| || || ||||| | ||| | |||||||| || |||||||| || || Sbjct 23767837 TTGAGGGAGAAGGGGGCCCCGATCTCCACCATGCTCTCCCCAAAGATGGCGTTGGCTTGC 23767778 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 || || || | | | || | ||||| || | || | || |||||| || || | Sbjct 23767777 GGCTTCTCCAGCAGCAGCCCCGGGTAGAACTCCAGGGCATTGATGTCGCCGTACAGCTCC 23767718 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| || || ||| |||||| ||| ||| || Sbjct 23767717 TCCAGCTGCGCCGCTTTCTCCTCCTCTCCTGCA 23767685 Score = 89.7 bits (98), Expect = 7e-13 Identities = 176/258 (68%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 9715 TCCCCGGTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGT 9774 || ||| | | ||| || || || || || || | ||||||||| ||||| |||||| Sbjct 23766199 TCACCGATGAGGATGAGCCGGGTCGTCTGGAAGAGCTGCTCGTCGCCCCACGTCGGGTGC 23766140 Query 9775 TCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATC 9834 || || || || | |||||||| | |||||| || | ||||| | ||| ||||||||| Sbjct 23766139 TCCTGCTTCAGCAGGTCGCAGACGCGGTTGTGCTCGCGGAGCCAGAGGGTCGCGTACATC 23766080 Query 9835 ATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCAT---CG 9891 || | || |||| | |||||||| || | ||||| || | || || | || Sbjct 23766079 ATCAGCCCGGGCAGCAGCCCAAACACCTCCTGGCCCACGGCCAGCTGCTTCTCCTGGCCG 23766020 Query 9892 G-GCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACAT 9950 | || || ||| || | ||| |||||| | | ||| || |||||||| |||| Sbjct 23766019 GTGCCGTTGGGG----TAGATCATGTGCACCGGCGCCTCGAGCACCGTGGGGGGGTACAC 23765964 Query 9951 TTCACCGTCAATAACCTG 9968 || ||||| | ||||| Sbjct 23765963 CTCCCCGTCCACCACCTG 23765946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723727267225400