Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13]
81 sequences; 2,640,792,433 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq39 122 1e-22
seq57 118 2e-21
>seq39
Length=85626906
Score = 122 bits (134), Expect = 1e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795
|| ||||| || ||| | || ||| ||||||| || || || || || || | || |||
Sbjct 50690149 GTAGTTTGGAATAACCGTTCATCATCCCATTCTGGATGCTCCTGCTTAAGGATGTCACAG 50690208
Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855
|||| |||||| || || ||||||||||| || |||||||||||||| || || | ||||
Sbjct 50690209 ACCCGGTTGTGCTCCCTGAGCCATATGGTAGCATACATCATTAAACCTGGGACCAGACCA 50690268
Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915
|||||||| | || || | || | || | || || || | || | ||| |||||
Sbjct 50690269 AACACTTCCTGTCCTACAGAGAATTGTAGGTGCTCAGGAACATGAGGAGGATATAGCATT 50690328
Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962
| | || || || || || || || || |||||||| || ||||
Sbjct 50690329 TCTGCTTGAGTATCCTTCACTGTTGGAGGGTACATTTCTCCACCAAT 50690375
Score = 93.3 bits (102), Expect = 6e-14
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448
|||||| || || | || ||||||||||| || | || || || || | ||| |||||
Sbjct 50691956 ACCTTTAACACCCATGGGTGTAGGGCAGTCTCGTGCTACTGGTGGAAGGGCTCTTGTATA 50692015
Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508
||||| || || ||||| ||||||||||| ||||| | || || ||||| ||
Sbjct 50692016 GTAGGAAAGGTTGGAAAAGGCTTCCCAGCTTTTGTAACTGTATTCACTATTGTATGTTGG 50692075
Query 10509 GGGACTGTCAATCATCTCGGACCTGGCTA 10537
|||||||||||||| | ||||| ||||
Sbjct 50692076 GGGACTGTCAATCAAATGTGACCTTGCTA 50692104
Score = 87.8 bits (96), Expect = 3e-12
Identities = 125/174 (72%), Gaps = 4/174 (2%)
Strand=Plus/Plus
Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612
||||| | || | ||||||| |||| || || ||||| || || || |||| |||||||
Sbjct 50689043 TCAGGTAGAAGTGGATGCCAGTGGTACAGAGTGTTGAATTCAGCTGCAATTCTGTTCTGG 50689102
Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670
|||||||| ||| ||||| | ||| |||||||| | |||| ||| ||||| |
Sbjct 50689103 TACTGAAACTTTTGGT--TAAACAGAAGCTCAGGGTCAAACTTCAGCTTGAAATGGTAGC 50689160
Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGTAA 9724
| || | || || ||||| | | || | ||| || ||||| ||||| ||||
Sbjct 50689161 CACTCAAGTGTTGCACATAGTCTTCAATAACAATCTTGATGGTCTCCCCTGTAA 50689214
>seq57
Length=27084703
Score = 118 bits (130), Expect = 2e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025
||||||||||||||||| ||||||||| | |||||||||||| |||| ||| |||||
Sbjct 23767897 CCGCCGAAGGTGCTGGGCTTCCAGTACTCGGGGGAGCAGATGGGGTTCCCCAGCAGCCCC 23767838
Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085
|| | ||| || || ||||| | ||| | |||||||| || |||||||| || ||
Sbjct 23767837 TTGAGGGAGAAGGGGGCCCCGATCTCCACCATGCTCTCCCCAAAGATGGCGTTGGCTTGC 23767778
Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145
|| || || | | | || | ||||| || | || | || |||||| || || |
Sbjct 23767777 GGCTTCTCCAGCAGCAGCCCCGGGTAGAACTCCAGGGCATTGATGTCGCCGTACAGCTCC 23767718
Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178
|||| || || ||| |||||| ||| ||| ||
Sbjct 23767717 TCCAGCTGCGCCGCTTTCTCCTCCTCTCCTGCA 23767685
Score = 89.7 bits (98), Expect = 7e-13
Identities = 176/258 (68%), Gaps = 8/258 (3%)
Strand=Plus/Minus
Query 9715 TCCCCGGTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGT 9774
|| ||| | | ||| || || || || || || | ||||||||| ||||| ||||||
Sbjct 23766199 TCACCGATGAGGATGAGCCGGGTCGTCTGGAAGAGCTGCTCGTCGCCCCACGTCGGGTGC 23766140
Query 9775 TCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATC 9834
|| || || || | |||||||| | |||||| || | ||||| | ||| |||||||||
Sbjct 23766139 TCCTGCTTCAGCAGGTCGCAGACGCGGTTGTGCTCGCGGAGCCAGAGGGTCGCGTACATC 23766080
Query 9835 ATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCAT---CG 9891
|| | || |||| | |||||||| || | ||||| || | || || | ||
Sbjct 23766079 ATCAGCCCGGGCAGCAGCCCAAACACCTCCTGGCCCACGGCCAGCTGCTTCTCCTGGCCG 23766020
Query 9892 G-GCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACAT 9950
| || || ||| || | ||| |||||| | | ||| || |||||||| ||||
Sbjct 23766019 GTGCCGTTGGGG----TAGATCATGTGCACCGGCGCCTCGAGCACCGTGGGGGGGTACAC 23765964
Query 9951 TTCACCGTCAATAACCTG 9968
|| ||||| | |||||
Sbjct 23765963 CTCCCCGTCCACCACCTG 23765946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723727267225400
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