Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq58 125 8e-24 seq64 93.3 5e-14 >seq58 Length=12078735 Score = 125 bits (138), Expect = 8e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||||| |||||| |||| || ||||| ||||| |||||||| || Sbjct 9617671 CCACCCCTGAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 9617730 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||| || || |||| | ||||||||| | || Sbjct 9617731 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 9617790 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || |||||| |||||| ||| | || | | ||||| || | || || Sbjct 9617791 ATGCCTTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACT 9617850 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCAC 46600 |||| ||||| || ||||| ||||| || || |||||||| ||||| ||| || Sbjct 9617851 TCCAGGGTGATTGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGAAC 9617904 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||||| |||||| |||| || ||||| ||||| |||||||| || Sbjct 9617215 CCACCCCTGAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 9617274 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||| || || |||| | ||||||||| | || Sbjct 9617275 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 9617334 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || |||||| ||||| ||| | || | | ||||| || | || || Sbjct 9617335 ATGCCTTCTTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 9617394 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 9617395 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 9617441 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||||| |||||| |||| || ||||| ||||| |||||||| || Sbjct 9617443 CCACCCCTGAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 9617502 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||| || || |||| | ||||||||| | || Sbjct 9617503 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 9617562 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || |||||| ||||| ||| | || | | ||||| || | || || Sbjct 9617563 ATGCCTTCTTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 9617622 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 9617623 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 9617669 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| |||| || ||||| ||||| |||||||| || || ||||| | Sbjct 9616998 ACGCAGCACCAGGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCC 9617057 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||| || || |||| | ||||||||| | || | || || || Sbjct 9617058 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTT 9617117 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| ||||| ||| | || | | ||||| || | || || |||| ||||| Sbjct 9617118 GTCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGAT 9617177 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| ||||| || || |||||||| ||||| Sbjct 9617178 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 9617213 >seq64 Length=15301441 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 46481 GCCGGCACG--CTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCG 46538 |||||||| | |||||||||| |||||| ||||| || | | |||||||| | Sbjct 14256341 GCCGGCACCTACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGG 14256400 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| ||||||||| |||||||||||||| || |||||||| ||||| Sbjct 14256401 GCTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 14256455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237827696120