Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq26 102 6e-16 seq69 95.1 9e-14 seq46 89.7 4e-12 >seq26 Length=15469835 Score = 102 bits (112), Expect = 6e-16 Identities = 354/544 (65%), Gaps = 10/544 (2%) Strand=Plus/Minus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| || ||||||||||||||||| | | | || || | ||| |||||||| Sbjct 10585388 GCACCATAAGCTACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 10585329 Query 517670 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 || | | || |||| ||| | ||| || || |||| || || ||||| ||||| || Sbjct 10585328 AAGTCTTGTAGGAGTT-TCTGAATCTTTGGGATGCGAGTGGACCCACCAACCAATACTAT 10585270 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 ||||| | ||| ||||| ||||| || | |||| || | || || || || || || Sbjct 10585269 GTCATGGATCTGGGATTTGTCCAGCTTGGCATCCCGCAAGGCCTTCTCCACAGGGTCCAG 10585210 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT- 517847 | | | |||| || | | | ||||| || ||||| || || ||| | Sbjct 10585209 AGTACCACGGAACAGATCAGCATTCAACTCTTCAAAGCGAGCTCGGGT--GATTGAGGTG 10585152 Query 517848 TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 517906 || || ||||| || || | | |||||||| ||||| | | || || || || Sbjct 10585151 TAGAAGTCAATGCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGTGTGCTGGAGGAG 10585092 Query 517907 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG--CTTTTGCTGATT 517964 || | ||| || ||||||||||||||||| | || | || | | || ||| | || Sbjct 10585091 AGGGTACGCTTTGCACGTTCACATGCTGTGCGGAGACGGCGAACTGCTCTCTTGTT--TT 10585034 Query 517965 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGAT 518024 | | | ||| | || | || | |||||| || ||| | | || | | | Sbjct 10585033 CACTGATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATTCTGT 10584974 Query 518025 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 518084 ||||||| ||||| || |||| | |||| |||| || | | |||| || | | Sbjct 10584973 TATCAAAGTCTTCTCCACCCAGGTGGGTATCACCTGCAGTGGACTTCACTTCAAAGATAC 10584914 Query 518085 CATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 518144 ||||||| | | | || || ||||| ||| |||||||||| ||||| || | | Sbjct 10584913 CATCTTCGATGGTGAGAATAGACACATCGAAGGTGCCACCACCCAGGTCAAAGATCAAAA 10584854 Query 518145 CATT 518148 |||| Sbjct 10584853 CATT 10584850 Score = 93.3 bits (102), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||||||| ||||||||||| || |||| | || Sbjct 10584706 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCTGTTGGTTCATTGATGATTCGGAGTACG 10584647 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||| ||||| | || |||||||| ||||| || | || || || || || || Sbjct 10584646 TTGAGACCTGCAATAGTACCAGCATCTTTTGTGGCCTGGCGCTGGGAGTCATTGAAGTAG 10584587 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 || || ||||| | || |||| ||| || Sbjct 10584586 GCTGGTACAGTGACCACAGCATTAGTAAC 10584558 >seq69 Length=8766045 Score = 95.1 bits (104), Expect = 9e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || || | || ||||| |||||||| |||||| | ||| | | ||||| Sbjct 7590343 TGTTGTTGCTACTGTGGCTTTTGGAATGGGTATCAATAAAGCAGATATCCGGAGAGTTAT 7590402 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 |||||||||||| || ||| | || ||| || |||||||||||||| ||||| || || Sbjct 7590403 TCATTATGGAGCCCCTAAGGAAATGGAATCATACTATCAAGAAATTGGAAGAGCTGGCCG 7590462 Query 367113 TGATGGA 367119 ||||||| Sbjct 7590463 TGATGGA 7590469 >seq46 Length=49293797 Score = 89.7 bits (98), Expect = 4e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 ||||||||| |||||| | |||||| || || |||||||||||||| |||||||| | Sbjct 42475819 CTTTGTCTTCAGATTTATCTAAACCATAAGCCAAGGCAGCAGCAGTTGGCTCATTAATCA 42475878 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 ||||| |||||| | |||||||| ||| ||||| || || || || Sbjct 42475879 CTCTCAGAACATTCAATCCAGCAATCTGTCCAGCATCCTTGGTAGCCTG 42475927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780818380513186