Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq71 302 6e-77 seq26 185 1e-41 seq57 86.0 8e-12 >seq71 Length=159024714 Score = 302 bits (334), Expect = 6e-77 Identities = 818/1239 (66%), Gaps = 32/1239 (3%) Strand=Plus/Minus Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | || ||| || |||| || || ||||| || |||||||||| || | | Sbjct 17526664 GTCATGACGCCGCCCGCCGTCTCGATGCCGAGGGACAGCGGCGTCACGTCCAGCAGCAGC 17526605 Query 6986 AGGTCTTGAACAGATTCGTTCC--CTT--CACCCGTTAAGATGGCGGCTTGGACCGTCGC 7041 ||||| || || ||| ||| ||| | ||| | | |||||||||||| |||| ||| Sbjct 17526604 AGGTCCTGCACG--TTC--TCCGACTTGTCGCCCATGAGGATGGCGGCTTGCACCGCCGC 17526549 Query 7042 CCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATA 7101 ||||| || ||||||||||||||||| || | || ||||| || || ||||| || | Sbjct 17526548 GCCGTACGCCACCGCCTCATCGGGGTTGATGCTCTTGTTCAGCTCCTTGCCGTTGAAGAA 17526489 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 ||| | || | || || || ||||| || ||||| || || |||| ||||| || Sbjct 17526488 GTCCTGCAGCAGCTTCTGGATCTTGGGGATGCGCGTCGAGCCGCCCACCAGCACGATCTC 17526429 Query 7162 ATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACA 7221 | ||| | | || || | ||| | ||| || || | || || || || |||| Sbjct 17526428 CTGCACCTGCCCCTTGTCCAGCTTGGCGTCGCGCAGCGCCTTCTCCACCGGCTCCAGCGT 17526369 Query 7222 TTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAA 7281 ||||||| ||| ||| ||||| || || || || || ||||| || ||||| Sbjct 17526368 GCCGCGGAACAGGTCGGCGTTCAGCTCCTCGAAGCGCGCCCGCGTGATGGACGTGTAGAA 17526309 Query 7282 ATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGT 7341 || | ||| ||| | | ||| || || || ||| | | || | | ||| | ||| Sbjct 17526308 GTCGATGCCCTCGAACAGCGAGTCGATCTCGATGCTGGCCTGCGTGGACGAGCTCAGCGT 17526249 Query 7342 TCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAAT 7401 ||||| || ||||| |||||||| || | || || | || ||| ||| ||| || Sbjct 17526248 GCGCTTGGCCCGCTCGCACGCCGTGCGCAGCCGCCGCACCGCCCGCTTGTTGCCGCCGAT 17526189 Query 7402 ATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAA 7461 || ||| || || || || ||||| || |||||| | | | ||||| Sbjct 17526188 GTCGCGCTTGTGCTTGCGCTTGAACTCCTCCACGAAGTGCGTCACCATGCGGTTGTCGAA 17526129 Query 7462 ATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTC 7521 || || || |||| ||| || || ||||| |||| || || || ||||| || | || Sbjct 17526128 GTCCTCGCCGCCCAGGTGCGTGTCGCCCGCCGTCGACTTCACCTCGAAGATGCCGTCCTC 17526069 Query 7522 AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGT 7581 ||| | | | || || || || || || || |||||||| || || || |||||| | Sbjct 17526068 TATGGTGAGGATGGACACGTCGAAGGTGCCGCCGCCCAGGTCGAAGATCAGCACGTTCTT 17526009 Query 7582 ATCGTCG------TCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| || | ||||| || || ||||| ||||| || |||||||| || || Sbjct 17526008 CTCGCCGGCGCGCGCGCCCTTCTTGTCCAGCCCGTAGGCGATGGCGGCCGCCGTGGGCTC 17525949 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || || || | ||| ||||| | || || | ||||| || || || || || Sbjct 17525948 GTTGATGATGCGCATCACGTTGAGGCCCGTGATGGTGCCTGCATCCTTGGTAGCCTGGCG 17525889 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||||| ||||| |||||||| || ||||| | ||| |||| | || || ||| || Sbjct 17525888 CTGCGAGTCGTTGAAGTAGGCGGGCACCGTGATGACGGCGTTCTGCACCTTGCGACCCAG 17525829 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 || | || ||||| || ||||| ||||| || ||||| || ||||| || | | Sbjct 17525828 GTAGGCCTCAGCGATCTCCTTCATCTTGGTCAGCACCATGGAGCTGATCTCCTC-GGGGA 17525770 Query 7816 AAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGG 7874 | | || || | ||| || || | || || | | | |||| || || |||| Sbjct 17525769 AGAAGGTCTTGGATTCGCCTTTGTACTCCACCTGCACCTTGGGCTT----GC--CACCCT 17525716 Query 7875 GGATAAC----CTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAAC 7930 | | || | | | | ||| | ||||| || | || ||| |||| || Sbjct 17525715 CGCTCACTACGCGGA-AGGGCCAGTGCTTCATGTCTGCCTGCACCGTGGGGTCGTCGTAC 17525657 Query 7931 TTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGG 7990 || | ||||| || ||||| || || || | ||||| ||||||||||||| ||| Sbjct 17525656 TTGCGGCCGATGAGGCGCTTGGCGTCGAAGATGGTGTTAGTGGGGTTCATGGCCACCTGG 17525597 Query 7991 TTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG 8050 ||||| |||||||| ||||| || || || | || || || || ||||| | |||| Sbjct 17525596 TTCTTGGCCGCGTCGCCGATGAGGCGCTC---CGTGTCTGTGAAGGCCACGTA-GCTGGG 17525541 Query 8051 -GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCC 8109 || || || || || |||||||| || || || || || | | || |||| || Sbjct 17525540 CGTGGTACGGTTGCCCTGGTCGTTGGCGATGATCTCCACCTTCCCATGCTGGAAGACACC 17525481 Query 8110 GACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||||| || ||||| || || || || || ||||| || Sbjct 17525480 CACGCAGGAGTACGTGGTGCCCAAGTCGATGCCGATCGC 17525442 >seq26 Length=15469835 Score = 185 bits (204), Expect = 1e-41 Identities = 359/530 (68%), Gaps = 0/530 (0%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| || || || | || ||||| ||||| || || || Sbjct 10585388 GCACCATAAGCTACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 10585329 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | || || | || ||||| || ||||| || || || ||||| ||||| || || Sbjct 10585328 AAGTCTTGTAGGAGTTTCTGAATCTTTGGGATGCGAGTGGACCCACCAACCAATACTATG 10585269 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | ||||| || | ||| | || || | | || || ||||| |||| | Sbjct 10585268 TCATGGATCTGGGATTTGTCCAGCTTGGCATCCCGCAAGGCCTTCTCCACAGGGTCCAGA 10585209 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| || | || || ||||| || || ||||| || || || ||| Sbjct 10585208 GTACCACGGAACAGATCAGCATTCAACTCTTCAAAGCGAGCTCGGGTGATTGAGGTGTAG 10585149 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| ||| || || | |||||||| ||||| | | |||| | || || | Sbjct 10585148 AAGTCAATGCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGTGTGCTGGAGGAGAGG 10585089 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| || ||||| || || || | ||| |||| || | | ||| | Sbjct 10585088 GTACGCTTTGCACGTTCACATGCTGTGCGGAGACGGCGAACTGCTCTCTTGTTTTCACTG 10585029 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || |||||||| || || || || || || || |||||| | | ||| ||| Sbjct 10585028 ATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATTCTGTTATCA 10584969 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || ||||| ||||||| ||| ||||| || || || | || |||||||||||||| || Sbjct 10584968 AAGTCTTCTCCACCCAGGTGGGTATCACCTGCAGTGGACTTCACTTCAAAGATACCATCT 10584909 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAAT 7569 || ||| | | | || ||||| || || ||||||||||||||||| || Sbjct 10584908 TCGATGGTGAGAATAGACACATCGAAGGTGCCACCACCCAGGTCAAAGAT 10584859 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 7956 CAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGAC 8015 ||||||||||||| ||||||||||||| ||||||||||| || || ||||| | || Sbjct 10583324 CAAAAACTGTGTTGGTGGGGTTCATGGCAACCTGGTTCTTCGCAGCATCACCGATCA-AC 10583266 Query 8016 GTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCG 8075 | | | ||||| || || ||||| ||| || || | || || ||||| || | Sbjct 10583265 CT--CTCGGTGTCCGTGAAGGCAACGTAGCTTGGCGTGGTCCTGTTACCCTGGTCATTGG 10583208 Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135 | || ||||| || | | | ||| ||||||| || || || || || || || | || Sbjct 10583207 CGATGATTTCCACCTTGCCATGTTGGAAGACGCCAACACAGGAGTAGGTGGTCCCGAGAT 10583148 Query 8136 CAATACCGATTGCTTGAGTCATTTTATATATTTTGT 8171 |||| || | ||| ||| |||| | ||||||| Sbjct 10583147 CAATCCCAACAGCT--GGTCCTTTT-GACATTTTGT 10583115 >seq57 Length=27084703 Score = 86.0 bits (94), Expect = 8e-12 Identities = 123/173 (71%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| ||||||| ||| ||||| || ||| || ||||||||||| ||| Sbjct 25552120 TCAAAGTCTTCTCCACCCAGGTGAGTATCTCCATTGGTGGCCACGACTTCAAAGACACCA 25552179 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||| | | || ||||||||||| || ||||||||||| ||||| | || | | Sbjct 25552180 TTATCGATGGTAAGCAGGGAAACATCAAAGGTTCCACCACCCAGATCAAACACAAGGATG 25552239 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGT 7629 ||| | || | || ||||||| || ||||| || || || || || || Sbjct 25552240 TTCTTCTCACCCTC---CCTCTTATCTAGTCCGTAAGCAATGGCAGCAGCTGT 25552289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132156928040