Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq58 113 3e-20 >seq58 Length=12078735 Score = 113 bits (124), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||| ||| | ||| ||| ||||| ||||| ||||| || Sbjct 9617215 CCACCCCTGAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 9617274 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 9617275 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 9617334 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || || ||||| |||||| || || || || || | |||| || ||||| Sbjct 9617335 ATGCCTTCTTTGTCCTGAATCTTAGCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCAA 9617392 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | ||| ||||| || || || || ||||||||||||||||||||| Sbjct 9617393 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATA 9617442 Score = 113 bits (124), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||| ||| | ||| ||| ||||| ||||| ||||| || Sbjct 9617443 CCACCCCTGAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 9617502 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 9617503 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 9617562 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || || ||||| |||||| || || || || || | |||| || ||||| Sbjct 9617563 ATGCCTTCTTTGTCCTGAATCTTAGCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCAA 9617620 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | ||| ||||| || || || || ||||||||||||||||||||| Sbjct 9617621 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATA 9617670 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| ||| ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 9617005 ACCAGGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 9617064 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | || || ||||| | Sbjct 9617065 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGA 9617124 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | |||| || |||||| || | ||| ||||| | Sbjct 9617125 ATCTTAGCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCT 9617182 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || || ||||||||||||||||||||| Sbjct 9617183 TGCCAGTCAGGGTCTTCACAAAGATCTGCATA 9617214 Score = 102 bits (112), Expect = 5e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||| ||| | ||| ||| ||||| ||||| ||||| || Sbjct 9617671 CCACCCCTGAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 9617730 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 9617731 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 9617790 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || || ||||| ||||| || || || || || | |||| || ||||| Sbjct 9617791 ATGCCTTCTTTGTCCTGGATCTTAGCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCAA 9617848 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || | ||| || || || || || || |||||||||||||||||||| || Sbjct 9617849 CTTCCAGGGTGATTGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 9617900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633279525768