Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq74 132 5e-26 seq38 107 2e-18 >seq74 Length=41239083 Score = 132 bits (146), Expect = 5e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | ||||||||||| || | |||||||| | ||||||||| | Sbjct 8041925 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 8041866 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | ||||| || || || ||||| || ||||||||||| || ||||||||||||||||||| Sbjct 8041865 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAG 8041806 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 8041805 CTACTACACGTTCTCC 8041790 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280 || |||||| | || | ||||| | | ||||||||||||||||||||| ||||| || Sbjct 8038876 TGGATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCAT 8038817 Query 19281 AGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 || ||||| || || |||||||| | |||||||| ||||| ||||| Sbjct 8038816 GGCAATCTGGAAGCCATAAAAACAGCGAGCTTCTGTAATCTGCACTTC 8038769 >seq38 Length=209695328 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 18975 ATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCC 19034 ||||| | |||| ||||| || || | ||||| || || || | ||||||||||| || Sbjct 163297290 ATGTATTACCTCATCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCC 163297349 Query 19035 TCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGC 19094 ||| || || | ||| ||||| | |||||| ||||| || ||||| || ||||| ||||| Sbjct 163297350 TCTCTTCTTCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAGATTCCTTCCACTGC 163297409 Query 19095 TGCAAAAGCAACTAGTCTTTCTCC 19118 ||||| ||||| | ||| || || Sbjct 163297410 AGCAAAGGCAACCACTCTCTCCCC 163297433 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||| |||||||| || |||||||| || |||||||||||||| | |||||| ||| Sbjct 163307560 ACCAGGTTTTCATTTACAATTCCATCGCTGGCTGCAAAAAATGCCAGGACATGTGATATA 163307619 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTAC 19463 |||| |||||| ||||| | || | ||||| | | || || || |||||||| || Sbjct 163307620 AAATATTTTTCTTCTGATTTCAACTTGTTCCAGTGAGGAAGGTCCTTTGATAAATCAAC 163307678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108230864840