Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13]
81 sequences; 2,640,792,433 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq74 134 2e-26
seq38 95.1 1e-14
>seq74
Length=41239083
Score = 134 bits (148), Expect = 2e-26
Identities = 107/129 (83%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259
||||||||||| || | ||||||||||| || | ||| |||||||| |||||||| ||
Sbjct 8041923 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 8041864
Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319
| |||||| || | ||||||||| ||||||||||| || ||||| ||||||||||| |||
Sbjct 8041863 AACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAGCT 8041804
Query 37320 ACAAGACGT 37328
|| | ||||
Sbjct 8041803 ACTACACGT 8041795
Score = 91.5 bits (100), Expect = 2e-13
Identities = 78/94 (83%), Gaps = 2/94 (2%)
Strand=Plus/Minus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930
||| |||||||| | ||||||||||| |||| |||| || || || |||||||| ||||
Sbjct 8043267 CATGACTCCCATCCTCTGATATTCTCCTACTC-TCTTCTCAAAGAAGTTTGTCTTGCCTT 8043209
Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964
| ||||| || || |||||||| |||||||||||
Sbjct 8043208 CAAGTGAGATGTTCTCCATAAAGTCAAATGGATT 8043175
Score = 82.4 bits (90), Expect = 9e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498
|||| |||| ||||| || || || | ||| |||||||| || ||||| ||||| || ||
Sbjct 8038873 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 8038814
Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTC 37528
||||| || ||||||||||| | ||||||
Sbjct 8038813 AATCTGGAAGCCATAAAAACAGCGAGCTTC 8038784
>seq38
Length=209695328
Score = 95.1 bits (104), Expect = 1e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259
|||||||| || || | ||||| || || || | ||| ||||| | ||||| || ||
Sbjct 163297300 TCATCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 163297359
Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319
| ||||||||| || ||||||||||| || ||||| || ||||| ||||| ||||| ||
Sbjct 163297360 AGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGGCA 163297419
Query 37320 AC 37321
||
Sbjct 163297420 AC 163297421
Score = 82.4 bits (90), Expect = 9e-11
Identities = 79/100 (79%), Gaps = 1/100 (1%)
Strand=Plus/Plus
Query 37429 TTTCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATAT 37488
||||| || |||| | || ||||| || ||||| | ||| ||||| || ||||||| ||
Sbjct 163306215 TTTCT-CAGGATCTTTGATGTAAGTGTCTATTAGCAGACTGTACATCTCTGAGTGAACAT 163306273
Query 37489 TTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528
||||||| |||||||||||||| ||||| | ||||||
Sbjct 163306274 TTTCAATGAGAATCTGAAAACCATAGAAACAGCGAGCTTC 163306313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592316200279240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |