Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq74 134 2e-26 seq38 95.1 1e-14 >seq74 Length=41239083 Score = 134 bits (148), Expect = 2e-26 Identities = 107/129 (83%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||||| || | ||||||||||| || | ||| |||||||| |||||||| || Sbjct 8041923 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 8041864 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | |||||| || | ||||||||| ||||||||||| || ||||| ||||||||||| ||| Sbjct 8041863 AACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAGCT 8041804 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 8041803 ACTACACGT 8041795 Score = 91.5 bits (100), Expect = 2e-13 Identities = 78/94 (83%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||||||||| |||| |||| || || || |||||||| |||| Sbjct 8043267 CATGACTCCCATCCTCTGATATTCTCCTACTC-TCTTCTCAAAGAAGTTTGTCTTGCCTT 8043209 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| || || |||||||| ||||||||||| Sbjct 8043208 CAAGTGAGATGTTCTCCATAAAGTCAAATGGATT 8043175 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| |||| ||||| || || || | ||| |||||||| || ||||| ||||| || || Sbjct 8038873 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 8038814 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||||| || ||||||||||| | |||||| Sbjct 8038813 AATCTGGAAGCCATAAAAACAGCGAGCTTC 8038784 >seq38 Length=209695328 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | ||||| || || || | ||| ||||| | ||||| || || Sbjct 163297300 TCATCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 163297359 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||||||||| || ||||||||||| || ||||| || ||||| ||||| ||||| || Sbjct 163297360 AGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGGCA 163297419 Query 37320 AC 37321 || Sbjct 163297420 AC 163297421 Score = 82.4 bits (90), Expect = 9e-11 Identities = 79/100 (79%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 37429 TTTCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATAT 37488 ||||| || |||| | || ||||| || ||||| | ||| ||||| || ||||||| || Sbjct 163306215 TTTCT-CAGGATCTTTGATGTAAGTGTCTATTAGCAGACTGTACATCTCTGAGTGAACAT 163306273 Query 37489 TTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||||||| |||||||||||||| ||||| | |||||| Sbjct 163306274 TTTCAATGAGAATCTGAAAACCATAGAAACAGCGAGCTTC 163306313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592316200279240