Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq26 98.7 6e-15 seq69 89.7 3e-12 >seq26 Length=15469835 Score = 98.7 bits (108), Expect = 6e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| |||| || | ||||| ||||| || || ||||| || || || || || || Sbjct 10584558 GTTACTAATGCTGTGGTCACTGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCCACA 10584617 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| || | ||||||||||| || || | || || || |||||||||||||| Sbjct 10584618 AAAGATGCTGGTACTATTGCAGGTCTCAACGTACTCCGAATCATCAATGAACCAACAGCT 10584677 Query 474848 GCCGCACTTGCTTATGG 474864 || || |||||||||| Sbjct 10584678 GCTGCTATTGCTTATGG 10584694 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 |||||| || ||| | || ||||| || ||| || || | ||| | || || Sbjct 10586347 TGAAGGGGAGAGAGCCATGACAAAAGACAACAACTTGCTGGGCAAGTTTGAACTGACTGG 10586406 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 || || || ||||| ||||| || ||||| |||||||| ||||||||||||||||| || Sbjct 10586407 CATCCCCCCAGCTCCTAGAGGCGTACCTCAGATTGAAGTCACTTTTGATATTGATGCCAA 10586466 Query 476152 TGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACTAT 476211 ||| || |||||||| | ||| || || | | |||| || || || ||||| Sbjct 10586467 TGGCATCCTTAATGTGTCCGCTGTGGACAAGAGCACTGGCAAGGAAAACAAGATCACTAT 10586526 Query 476212 TACAAA 476217 |||||| Sbjct 10586527 TACAAA 10586532 >seq69 Length=8766045 Score = 89.7 bits (98), Expect = 3e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || ||||| || ||||||||||| || ||| || | ||||| || ||| Sbjct 7590468 CCATCACGGCCAGCTCTTCCAATTTCTTGATAGTATGATTCCATTTCCTTAGGGGCTCCA 7590409 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||| || ||| | | ||||| |||||| |||||||||||||| || | || ||| Sbjct 7590408 TAATGAATAACTCTCCGGATATCTGCTTTATTGATACCCATTCCAAAAGCCACAGTAGCA 7590349 Query 627889 AC 627890 || Sbjct 7590348 AC 7590347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268175725516988