Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq70 156 5e-33 seq42 109 6e-19 >seq70 Length=183555969 Score = 156 bits (172), Expect = 5e-33 Identities = 586/916 (64%), Gaps = 5/916 (1%) Strand=Plus/Plus Query 160037 CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTC 160096 ||| | | ||| || || || ||| || | ||| || | || || |||||| || Sbjct 98009389 CAGAGCTTTGTCTCTCAAATATTCTTCTAAACACTGAATCGCAAAAGGGTCAACATCCGT 98009448 Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 || ||||| || || || | ||||| ||| | |||| | || ||||| Sbjct 98009449 ATCAAATTTGTTAGCAAAGAAGTGGTGT---TTCCACAACATCCCATTCAAATCTCCCAC 98009505 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| ||||| || || ||||| | || | || | ||| || || || |||| || || Sbjct 98009506 CCCAAACACACACACAGAACGGACATGAATTCCATGGCATGGTGGATAGGGAGCACCATT 98009565 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 || || ||||| ||||||||||||||||||| ||||| | || | ||| || || Sbjct 98009566 AAATACATCCCCTTCAAAGTACTGCCACTTCACAAATCTGGCAAGGGCATTCATATCAGA 98009625 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 || || || | | | ||| ||||| ||||| | || || | || | ||| Sbjct 98009626 AACATCATACTTATTGCTGGAAGAAACTGCACCTGGAACTTCTGGGATTCTTTGAATGGT 98009685 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT 160396 ||||||| || ||| || ||||| ||||| || |||| |||||| || || | ||| Sbjct 98009686 AGCCCACAAGTATTCATCAGGGCTATACGTATCTTTAGCCCATTCAATAAATTTAAGGAT 98009745 Query 160397 TAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCC 160456 | |||| | || | || | || | || ||||| || || ||||| Sbjct 98009746 TTTGCTGTTTTCTAACACATATTCTACAAATCTCCTACTAACAACAAAATAGGCACTGCC 98009805 Query 160457 GGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCAC 160516 || || || ||| | | ||| || | |||||| ||| |||| || | Sbjct 98009806 AGAAAAAATTGGTGTACTAAGAGGTGGTAGTTTTTTGTCTACACCCATGTTTTTCAGCTT 98009865 Query 160517 TCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTC 160576 ||| | || | | | | || ||||| | || |||| || ||||| || Sbjct 98009866 TCCATCAACAATTTCATAATGTTTTTTCCATCGTACTTCTTTGTTTGGAGGCATTTTCTC 98009925 Query 160577 CGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGT 160636 || |||| |||||| |||| | | | |||||| | || || || || || || Sbjct 98009926 AGTTTCTAAACTGTTTTCACCTTTTAAGGCTTTCAGTTTCTCCACAATTTCCTCATTGGT 98009985 Query 160637 CTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTC 160696 || | |||||||| | || || | ||||||| || |||||||| | || Sbjct 98009986 TTTAATGGGAAAGTCCATGCCACAAAGATTTATCAAATATTTCCATTTTGTATTCCTCCT 98010045 Query 160697 GTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTAC 160756 || ||||| ||||||| |||| ||||| || || | |||||| || || ||||| || Sbjct 98010046 GTAGAGGTCTTTCATGCAGTTAAGGTCTGCTTGTACCCTGCTCCATGATGCATACACCAC 98010105 Query 160757 GTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGC 160816 | || | || ||||| | |||||| ||||| ||||| || | |||||| ||| | Sbjct 98010106 ACTTTCCATTTGGCTGGCAATAAAGACATTATCAAAACATGATGCAATTCCCTTCACTG- 98010164 Query 160817 CAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCG 160875 ||| ||| | || | | |||| |||||| || | ||| || |||||||| | Sbjct 98010165 CAGCCAGATAAGATTCTGGAGACTTTTTGTCCACATGAATGCAGTAGTAATTCTGAGGAG 98010224 Query 160876 CGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGT 160935 ||||| | ||| || | ||||| ||||| || || || |||| | ||| || || | Sbjct 98010225 TATAGATTGACCTTAGAAGTCTCTCAAACATATCAATTTTGTGATAAACCACAATTGAAT 98010284 Query 160936 AGGCTATCGGAAACTC 160951 |||| || ||||| || Sbjct 98010285 AGGCAATAGGAAATTC 98010300 >seq42 Length=54617404 Score = 109 bits (120), Expect = 6e-19 Identities = 220/326 (67%), Gaps = 3/326 (1%) Strand=Plus/Minus Query 160046 GTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTT 160105 ||| ||||| || || ||||| || || || || | |||| || ||| || || Sbjct 40097023 GTGGCGCAGGTGCTCCTCCAGGCACTGCACCGCCTGCTCGTCCACACTCAGGTCAAACTT 40096964 Query 160106 ATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACAC 160165 || || | ||| || || | ||| || |||||| ||| |||||| ||| | | Sbjct 40096963 GTTGGCCAGCAGGTGTTGC---TGCTGGAGCATCCAGGGCAGGTCTCCCAGGCCGTAGAT 40096907 Query 160166 GCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTC 160225 ||||| || | |||| |||| |||| || ||||| | || || | | | ||| Sbjct 40096906 GCAGATGGCGTGCCGGTGCGTGCCGGTGCACGGTGGGTAGGGTGCCCCCCGCCCTATGTC 40096847 Query 160226 ACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTA 160285 || || |||||||||||| ||||| | || | || | |||||| || | ||| Sbjct 40096846 GCCCTCCAGGTACTGCCACTTGACAAAGCGTGCCAGGGCATTCATGTCAGACAGATGGTA 40096787 Query 160286 TTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAG 160345 |||| | | || | || || || ||||| |||| |||||||| |||||||||| Sbjct 40096786 CTTGTCGTTGGGCGGCAAGGAGCCCGGCACGCCCGGCAGGCGCTGTAGCGTGGCCCACAC 40096727 Query 160346 GTGTTCGTCGGGGCTGTACGTGTCCT 160371 ||| || || |||||||||||||||| Sbjct 40096726 GTGCTCATCTGGGCTGTACGTGTCCT 40096701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577218615565560