Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq78 100 3e-16 seq74 86.0 7e-12 >seq78 Length=264820526 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| ||||| || || || |||||||| |||||||| |||||||| |||||| Sbjct 1193878 TCCCAGACTGAGACCGGTACCCCTTATATGCTGTACAAGGACTCTTGTAACCGGAAGAGC 1193937 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| |||| |||| || |||||| || || || ||||||||||| | |||||| Sbjct 1193938 AACCAGCAGAACCTGGGCACCATCAAGTGCAGCAACCTGTGCACGGAAATAGTGGAGTAC 1193997 Query 76016 ACAGATAAGGATGAG 76030 || || |||||| Sbjct 1193998 ACCAGCAAAGATGAG 1194012 >seq74 Length=41239083 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 |||||||||||||||||||||| ||||| ||||| || ||||| ||||||||||||| Sbjct 8043173 AGAATCCATTTGACTTTATGGAGAACATCTCACTTGAAGGCAAGACAAACTTCTTTGAGA 8043232 Query 65501 AGCGAGTTGGGGACTAT 65517 || |||| || || ||| Sbjct 8043233 AGAGAGTAGGAGAATAT 8043249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568995973280