Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq68 158 1e-32 seq50 136 5e-26 seq54 113 6e-19 seq74 104 3e-16 seq61 87.8 2e-11 >seq68 Length=189227759 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| | | || Sbjct 52770829 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCAGTCTGGATCTCCCTGGACGTGA 52770770 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| ||||||| | ||||||| |||| | Sbjct 52770769 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCGCCGGCGATGCGCTCGAAAA 52770710 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| ||| |||| Sbjct 52770709 TGTCGTTGACGAAAGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGT 52770650 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 52770649 GCACCTGCTTCAGCACCTTGTA 52770628 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 52787075 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCAGTCTGGATCTCCCGGGACGTGA 52787134 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||||||| ||||||| ||||||| |||| | Sbjct 52787135 TGGTCGAGCGCTTGTTGTAGTGCGCCAGACGGGAGGCCTCGCCAGCGATGCGCTCGAAAA 52787194 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | ||| |||||||| ||| |||| Sbjct 52787195 TGTCGTTGACGAAAGAGTTCATGATGCCCATGGCCTTAGATGAGATGCCGGTGTCCGGGT 52787254 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 52787255 GCACCTGCTTCAGCACCTTGTA 52787276 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 52809227 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCAGTCTGGATCTCCCGGGACGTGA 52809168 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| ||||||| | ||||||| || | | Sbjct 52809167 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCGCCGGCGATGCGCTCAAAGA 52809108 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| ||| |||| Sbjct 52809107 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGT 52809048 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 52809047 GCACCTGCTTCAGCACCTTGTA 52809026 Score = 141 bits (156), Expect = 1e-27 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 1254354 TCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGC 1254413 || ||| ||| | |||||||||||| ||||||||||| || | ||| || |||| Sbjct 52746685 TCCCCGGGCAGCAGCAGGCGCACGGCAGTCTGGATCTCCCGGGACGTGATGGTCGAGCGC 52746744 Query 1254414 TTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACA 1254473 ||||| |||||||||| ||| |||||| | ||||||| || | ||||||||||| Sbjct 52746745 TTGTTGTAGTGCGCCAGGCGGGATGCCTCGCCGGCGATGCGCTCAAAGATGTCGTTGACG 52746804 Query 1254474 AACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTG 1254533 || |||||||||| ||| | |||| |||||||| ||| |||||||||||||| Sbjct 52746805 AAAGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGCACCTGCTTC 52746864 Query 1254534 AGCACCTTGTA 1254544 ||||||||||| Sbjct 52746865 AGCACCTTGTA 52746875 >seq50 Length=71552732 Score = 136 bits (150), Expect = 5e-26 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||| | ||| || || || Sbjct 128190 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGCACCTCACGGCTGGTGA 128131 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||||| | |||||||| || | |||||| || | ||||| |||| || Sbjct 128130 TGGTGGTGCGCTTGTTGTACTGCGCCAGGCGCGCCGCCTCGCTGGCAATGCGCTCGAACA 128071 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || || |||||||||| ||| | ||| |||||| ||| ||| |||| Sbjct 128070 CGTCGTTCACGAAGGAGTTCATGATGCTCATGGCCTTCGAGGAGATCCCCGTGTCTGGGT 128011 Query 1254523 GCACCTGC 1254530 |||||||| Sbjct 128010 GCACCTGC 128003 >seq54 Length=44825207 Score = 113 bits (124), Expect = 6e-19 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || |||||||| ||||| || || || | || Sbjct 10350700 GCTTGGCCAGCTCCCCTGGCAGCAGTAGACGCACGGCTGTCTGAATTTCCCGGGAAGTGA 10350641 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | ||||||||||| |||||| | ||||| || | | Sbjct 10350640 TGGTTGAGCGCTTGTTGTAATGCGCCAGACGAGAGGCCTCCCCAGCAATGCGCTCAAAAA 10350581 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| |||||||| |||||||||| ||| | |||| |||||| || |||||| | Sbjct 10350580 TGTCATTGACAAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATTCCGGTGTCGGGAT 10350521 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 10350520 GAACCTGCTTCAGCACCTTGTA 10350499 >seq74 Length=41239083 Score = 104 bits (114), Expect = 3e-16 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 |||||||||||||||||||| |||||||| ||||| |||||||||| |||||| | || Sbjct 8036184 CACCTCCTCGGCGGTCCAGAAGGAGGCCTCAGCCTTCTTGTACATCTGCCATACGTCGTG 8036125 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTCG 869944 ||| | | ||||||| ||| |||||| ||||| || |||| ||| || ||| Sbjct 8036124 GTACTGCACCGGGAAGATGACGAAGCGGCGCGGGTTCTCCCGCAGCAGCGGCTCG 8036070 >seq61 Length=21941714 Score = 87.8 bits (96), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 1852372 CTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAG 1852431 |||| | |||||||| || | ||| ||| | || |||||||| ||| || || Sbjct 15315798 CTGGAAGTCGGTGCCTCGGATGAACGTGAGCTTCTCAAGGGGCACGCCAATGCTCTCCAG 15315857 Query 1852432 CATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGT 1852491 |||||||||||| | |||||| ||||| || | || | ||| |||||||||| Sbjct 15315858 CATGGCCTTGATCACGGTCTCGTAGTAGCGGGTGCGTAGCTCCAGCAGCTCCCACGGCGC 15315917 Query 1852492 CTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGC 1852551 ||| |||||| || | |||||| | ||||||||| || || | ||| | | || || Sbjct 15315918 CTTCATGTTGTCCAGATAGGCGTGGAGGTCGGCAAACAGTATGGTCACCTGGC-GCAGGG 15315976 Query 1852552 CTGGAGAAAGTCGGC 1852566 | ||||| || |||| Sbjct 15315977 CGGGAGAGAGCCGGC 15315991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107132552760677