Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq68 210 3e-48 seq50 197 2e-44 seq54 138 2e-26 seq74 102 1e-15 >seq68 Length=189227759 Score = 210 bits (232), Expect = 3e-48 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 52809266 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 52809207 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| || ||||||||| | Sbjct 52809206 GCAGCAGGCGCACGGCAGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTAGT 52809147 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||||| | ||||||| || | ||||||||||| || ||||||| Sbjct 52809146 GCGCCAGGCGGGAGGCCTCGCCGGCGATGCGCTCAAAGATGTCGTTGACGAAGGAGTTCA 52809087 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| ||| |||||||||||||| |||||||||| Sbjct 52809086 TGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 52809027 Query 1485710 AAAC 1485713 | || Sbjct 52809026 ACAC 52809023 Score = 206 bits (228), Expect = 4e-47 Identities = 191/242 (79%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 52770866 TACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCAGC 52770807 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | |||||||||||| ||||||||||| | || ||| || ||||||||| | || Sbjct 52770806 AGCAGGCGCACGGCAGTCTGGATCTCCCTGGACGTGATGGTCGAGCGCTTGTTGTAGTGC 52770747 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||||||| ||||||| | ||||||| |||| ||||||||||| || ||||||||| Sbjct 52770746 GCCAGGCGGGAGGCCTCGCCGGCGATGCGCTCGAAAATGTCGTTGACGAAAGAGTTCATG 52770687 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| |||||||| ||| |||||||||||||| ||||||||||| Sbjct 52770686 ATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGTAC 52770627 Query 1485712 AC 1485713 || Sbjct 52770626 AC 52770625 Score = 197 bits (218), Expect = 2e-44 Identities = 190/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| || ||||| || ||||||||| ||||||| || ||| ||| Sbjct 52787036 TGTACTTGGTGACAGCCTTAGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 52787095 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| || ||||||||| | Sbjct 52787096 GCAGCAGGCGCACGGCAGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTAGT 52787155 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| ||| ||||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 52787156 GCGCCAGACGGGAGGCCTCGCCAGCGATGCGCTCGAAAATGTCGTTGACGAAAGAGTTCA 52787215 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || |||||||| ||| |||||||||||||| |||||||||| Sbjct 52787216 TGATGCCCATGGCCTTAGATGAGATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 52787275 Query 1485710 AAAC 1485713 | || Sbjct 52787276 ACAC 52787279 Score = 143 bits (158), Expect = 4e-28 Identities = 148/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 1485520 TCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGC 1485579 || ||| ||| | |||||||||||| ||||||||||| |||| ||| || |||| Sbjct 52746685 TCCCCGGGCAGCAGCAGGCGCACGGCAGTCTGGATCTCCCGGGACGTGATGGTCGAGCGC 52746744 Query 1485580 TTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACA 1485639 ||||| | ||||||||||| |||||| | ||||||| || | ||||||||||| Sbjct 52746745 TTGTTGTAGTGCGCCAGGCGGGATGCCTCGCCGGCGATGCGCTCAAAGATGTCGTTGACG 52746804 Query 1485640 AACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTG 1485699 || ||||||||||| ||| | ||| |||||||| ||| |||||||||||||| Sbjct 52746805 AAAGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGCACCTGCTTC 52746864 Query 1485700 AGCACCTTGTAAAC 1485713 ||||||||||| || Sbjct 52746865 AGCACCTTGTACAC 52746878 Score = 131 bits (144), Expect = 3e-24 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 52741539 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 52741598 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| || ||||||||| | Sbjct 52741599 GCAGCAGGCGCACGGCAGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTAGT 52741658 Query 1485590 GCGCCAGGCGGCCGGCCTCG 1485609 ||||||||||| ||||||| Sbjct 52741659 GCGCCAGGCGGGAGGCCTCG 52741678 >seq50 Length=71552732 Score = 197 bits (218), Expect = 2e-44 Identities = 182/228 (80%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| |||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 128229 TGTACTTAGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 128170 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||| | ||| ||| || ||| ||| |||||||||| || | Sbjct 128169 GCAGCAGGCGCACGGCCGTCTGCACCTCACGGCTGGTGATGGTGGTGCGCTTGTT-GTAC 128111 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 |||||||||| | |||||| || | ||||| |||| || |||||| || || |||||| Sbjct 128110 TGCGCCAGGCGCGCCGCCTCGCTGGCAATGCGCTCGAACACGTCGTTCACGAAGGAGTTC 128051 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||||| ||| | || |||||| ||| ||| |||||||||||| Sbjct 128050 ATGATGCTCATGGCCTTCGAGGAGATCCCCGTGTCTGGGTGCACCTGC 128003 >seq54 Length=44825207 Score = 138 bits (152), Expect = 2e-26 Identities = 183/254 (72%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||| ||||| |||||||| || || || || || ||| ||||||| || || ||| Sbjct 10350737 TACTTAGTGACAGCCTTGGTGCCTTCAGATACAGCATGCTTGGCCAGCTCCCCTGGCAGC 10350678 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || |||||||| ||||| || || |||| ||| || ||||||||| || Sbjct 10350677 AGTAGACGCACGGCTGTCTGAATTTCCCGGGAAGTGATGGTTGAGCGCTTGTTGTAATGC 10350618 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||| || |||||| | ||||| || | ||||| |||||||| ||||||||| Sbjct 10350617 GCCAGACGAGAGGCCTCCCCAGCAATGCGCTCAAAAATGTCATTGACAAAGGAGTTCATG 10350558 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| |||||| || |||||| || |||||||| ||||||||||| Sbjct 10350557 ATGCCCATGGCCTTGGAGGAGATTCCGGTGTCGGGATGAACCTGCTTCAGCACCTTGTAC 10350498 Query 1485712 ACAAAGGACGAGTA 1485725 ||| || ||||| Sbjct 10350497 ACATAGATGGAGTA 10350484 >seq74 Length=41239083 Score = 102 bits (112), Expect = 1e-15 Identities = 100/126 (79%), Gaps = 5/126 (4%) Strand=Plus/Minus Query 796293 GCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCA 796352 |||| | || ||||||||||||||||| ||||||||||| ||||| |||||||||| ||| Sbjct 8036192 GCCGTGCTC-ACCTCCTCGGCGGTCCAGAAGGAGGCCTCAGCCTTCTTGTACATCTGCCA 8036134 Query 796353 TATCCGT--TGGTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGC 796410 || ||| ||||| | | ||||| | || ||||| |||||||| || |||||| Sbjct 8036133 TA--CGTCGTGGTACTGCACCGGGAAGATGACGAAGCGGCGCGGGTTCTCCCGCAGCAGC 8036076 Query 796411 GGCTCG 796416 |||||| Sbjct 8036075 GGCTCG 8036070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916237783660559