Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq26 107 1e-17 seq69 89.7 4e-12 seq46 89.7 4e-12 >seq26 Length=15469835 Score = 107 bits (118), Expect = 1e-17 Identities = 355/544 (65%), Gaps = 10/544 (2%) Strand=Plus/Minus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| || ||||||||||||||||| | | | || || | ||| |||||||| Sbjct 10585388 GCACCATAAGCTACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 10585329 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 || | | || |||| ||| | ||| || || |||| || || ||||| ||||| || Sbjct 10585328 AAGTCTTGTAGGAGTT-TCTGAATCTTTGGGATGCGAGTGGACCCACCAACCAATACTAT 10585270 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | ||| ||||| ||||| || | |||| || | || || || || || || Sbjct 10585269 GTCATGGATCTGGGATTTGTCCAGCTTGGCATCCCGCAAGGCCTTCTCCACAGGGTCCAG 10585210 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT- 282014 | | | | |||| || | | | ||||| || ||||| || || ||| | Sbjct 10585209 AGTACCACGGAACAGATCAGCATTCAACTCTTCAAAGCGAGCTCGGGT--GATTGAGGTG 10585152 Query 282015 TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073 || || ||||| || || | | |||||||| ||||| | | || || || || Sbjct 10585151 TAGAAGTCAATGCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGTGTGCTGGAGGAG 10585092 Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG--CTTTTGCTGATT 282131 || | ||| || ||||||||||||||||| | || | || | | || ||| | || Sbjct 10585091 AGGGTACGCTTTGCACGTTCACATGCTGTGCGGAGACGGCGAACTGCTCTCTTGTT--TT 10585034 Query 282132 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGAT 282191 | | | ||| | || | || | |||||| || ||| | | || | | | Sbjct 10585033 CACTGATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATTCTGT 10584974 Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 ||||||| ||||| || |||| | |||| |||| || | | |||| || | | Sbjct 10584973 TATCAAAGTCTTCTCCACCCAGGTGGGTATCACCTGCAGTGGACTTCACTTCAAAGATAC 10584914 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 ||||||| | | | || || ||||| ||| |||||||||| ||||| || | | Sbjct 10584913 CATCTTCGATGGTGAGAATAGACACATCGAAGGTGCCACCACCCAGGTCAAAGATCAAAA 10584854 Query 282312 CATT 282315 |||| Sbjct 10584853 CATT 10584850 Score = 89.7 bits (98), Expect = 4e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||| ||||||||||| || |||| | || Sbjct 10584706 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCTGTTGGTTCATTGATGATTCGGAGTACG 10584647 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||| ||||| | || |||||||| ||||| || | || || || || || || Sbjct 10584646 TTGAGACCTGCAATAGTACCAGCATCTTTTGTGGCCTGGCGCTGGGAGTCATTGAAGTAG 10584587 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || ||||| | || |||| Sbjct 10584586 GCTGGTACAGTGACCACAGCAT 10584565 >seq69 Length=8766045 Score = 89.7 bits (98), Expect = 4e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || || | || ||||| |||||||| |||||| | ||| | | ||||| Sbjct 7590343 TGTTGTTGCTACTGTGGCTTTTGGAATGGGTATCAATAAAGCAGATATCCGGAGAGTTAT 7590402 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| ||||| || ||| | || ||| || |||||||||||||| ||||| || || Sbjct 7590403 TCATTATGGAGCCCCTAAGGAAATGGAATCATACTATCAAGAAATTGGAAGAGCTGGCCG 7590462 Query 131296 TGATGGA 131302 ||||||| Sbjct 7590463 TGATGGA 7590469 >seq46 Length=49293797 Score = 89.7 bits (98), Expect = 4e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380 ||||||||| |||||| | |||||| || || |||||||||||||| |||||||| | Sbjct 42475819 CTTTGTCTTCAGATTTATCTAAACCATAAGCCAAGGCAGCAGCAGTTGGCTCATTAATCA 42475878 Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 282429 ||||| |||||| | |||||||| ||| ||||| || || || || Sbjct 42475879 CTCTCAGAACATTCAATCCAGCAATCTGTCCAGCATCCTTGGTAGCCTG 42475927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740626423242306