Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq72 161 1e-34 >seq72 Length=50748683 Score = 161 bits (178), Expect = 1e-34 Identities = 414/620 (67%), Gaps = 13/620 (2%) Strand=Plus/Plus Query 176975 CACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGATGTTCCGAG 177034 ||| || ||||||| || | | || | ||||| || || || |||| |||| || || Sbjct 44500343 CACATGTATGAAAGAGTTTGCTGGAATATAATTCTCATAGTTTTCTCGGGATGGGCCCAG 44500402 Query 177035 TACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATATAGTCCCT 177094 ||| | ||||| | || || | || || ||| |||||||| ||||| || || | Sbjct 44500403 TACCACTGGTACAGACCCAGCAAGAAAAGCATTGTACAGTTTTTCCGTAATGTAATCTTT 44500462 Query 177095 GTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGA--AGATAGTAGCGGGATGAAG 177152 ||| | ||||| ||||| | || || |||||||| | ||||||| | | || ||| Sbjct 44500463 GTGGATTGAGTTTTCAAAGGAAAGGTAAAATTTACAAGTGGAGATAGTTG--GAATCAAG 44500520 Query 177153 TCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTATGTGTTTA 177212 | | ||| | ||| ||||| | | | | ||| || ||| || || |||| ||| Sbjct 44500521 TTTTTATCATTCACATAGTCTCCAAATGCTTGCCCATAGGTATGGATTTCAATGTATTTG 44500580 Query 177213 CTGAGCTCTAGGTAGTATCTCGA-TCTCACGTGGTCGTTGTTCCAATTGCTGACGACCCA 177271 || ||||| || || || || || | || || ||||| || || || ||||| Sbjct 44500581 CTAAGCTCATTATAATA-CTTGACTCGAGCATGCTCAGGATTCCAGTTACTTACAACCCA 44500639 Query 177272 GCAAACTAACTTGCTCTTTGCGGGAACGGGATTCGATACTAA-TGCAGTGTCTCTGAGCG 177330 || || ||||| |||||||| | || ||| | ||| || ||| || | | Sbjct 44500640 ACAGACCAACTT-CTCTTTGCTTG---GGACTTCAAATGTAAATGGAGTTGTACTAACCA 44500695 Query 177331 TTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGTGAGATTGA 177390 | | | ||||| ||||| |||||||| || || |||| ||| || | || | |||| Sbjct 44500696 TCATGAAGCCATAAGGCACCTGAATATCTGAATCACGTCGGTAAGTCAGGGTCAAGTTGA 44500755 Query 177391 AAAGGTTTTCTATACCT-TGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTTCATCCAT 177449 |||||| ||| || || | ||| || | ||| | | || || || ||||||||||| Sbjct 44500756 AAAGGTGTTCAATGCCGCTCTTTTGTGGAG-TGTGAGTTGGAGACTCCAAGTTCATCCAG 44500814 Query 177450 ATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTATACTTATC 177509 ||||| || || || | |||||| | || | ||||| | || |||| || || Sbjct 44500815 ATCCATTTCTGGAATGGTGGTCTAGTTTGCTGAGGTAAATTAGTCAGATCCCAGCTGATG 44500874 Query 177510 TCTCTGTGGTGAAAGACTACGGCATTGGCTTTGTAATAAACAGATCTGTCTACGGTAACG 177569 ||||||||||||| || ||||||| || | ||| ||| | || | ||| | || | Sbjct 44500875 TCTCTGTGGTGAATGAGAACGGCATGGGATCTGTTATATAATGAGCGGTCAATAGTCAGA 44500934 Query 177570 TGACACGCACGTATGTTAAA 177589 || ||| || | ||||| || Sbjct 44500935 TGGCACCCATGGATGTTGAA 44500954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578431414337600